myRT

myRT report for GCA_003465835.1_ASM346583v1

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Seq: QSBX01000043.1 Anaerotruncus sp. AF02-27 AF02-27.Scaf43, whole genome shotgun sequence (15028 bp)
Overview 1 RT 1: 10288-14825 bp Neighborhood of RT #1 [10288, 15028] Maff2 RVT-GII HNHc Maff2 TraG-D_C Feature: gene Location: 10288-11157 bp Feature: gene Location: 11227-11328 bp Feature: domain Description: Maff2 Location: 11230-11320 bp Feature: domain Description: Maff2 Location: 1 1 230-1 1 320 bp Feature: gene Location: 11478-13364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11811-12549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 81 1 -1 2549 bp Feature: domain Description: HNHc Note: nucleases Location: 13086-13248 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3086-1 3248 bp Feature: gene Location: 14068-14199 bp Feature: domain Description: Maff2 Location: 14071-14194 bp Feature: domain Description: Maff2 Location: 1 4071 -1 41 94 bp Feature: gene Location: 14420-15028 bp Feature: domain Description: TraG-D_C Location: 14471-14825 bp Feature: domain Description: TraG-D_C Location: 1 4471 -1 4825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)

Seq: QSBX01000001.1 Anaerotruncus sp. AF02-27 AF02-27.Scaf1, whole genome shotgun sequence (386147 bp)
Overview 1 RT 1: 29760-35438 bp 2 RT 2: 349937-361577 bp Neighborhood of RT #1 [29760, 35506] HTH_36 VirD4 RVT-GII HNHc VirD4 DUF3991 Toprim_2 Neighborhood of RT #2 [349937, 361582] MobC KOG1000 RVT-GII LPD11 YtxK COG4646 TTRAP Feature: gene Location: 29760-30020 bp Feature: domain Description: HTH_36 Location: 29793-29955 bp Feature: domain Description: HTH_36 Location: 2 9793-2 9955 bp Feature: gene Location: 30219-30854 bp Feature: domain Description: VirD4 Location: 30234-30798 bp Feature: domain Description: VirD4 Location: 302 34-30798 bp Feature: gene Location: 30994-32838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31294-32026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 94-32 02 6 bp Feature: domain Description: HNHc Note: nucleases Location: 32557-32728 bp Feature: domain Description: HNHc Note: nucleases Location: 32 557-32 72 8 bp Feature: gene Location: 33586-34467 bp Feature: domain Description: VirD4 Location: 33619-34450 bp Feature: domain Description: VirD4 Location: 33619-34450 bp Feature: gene Location: 34556-35506 bp Feature: domain Description: DUF3991 Location: 34928-35147 bp Feature: domain Description: DUF3991 Location: 3492 8-35147 bp Feature: domain Description: Toprim_2 Location: 35165-35438 bp Feature: domain Description: Toprim_2 Location: 35165-35438 bp Feature: gene Location: 349937-350269 bp Feature: domain Description: MobC Location: 350129-350237 bp Feature: domain Description: MobC Location: 35012 9-3502 37 bp Feature: gene Location: 350269-351297 bp Feature: domain Description: KOG1000 Location: 350290-350503 bp Feature: domain Description: KOG1000 Location: 3502 90-350503 bp Feature: gene Location: 351420-353327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351732-352458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351732 -352 458 bp Feature: gene Location: 354020-361357 bp Feature: domain Description: LPD11 Location: 356759-356951 bp Feature: domain Description: LPD11 Location: 356759-356951 bp Feature: domain Description: YtxK Location: 357602-358352 bp Feature: domain Description: YtxK Location: 357602 -358352 bp Feature: domain Description: COG4646 Location: 358421-360998 bp Feature: domain Description: COG4646 Location: 35842 1-360998 bp Feature: gene Location: 361376-361582 bp Feature: domain Description: TTRAP Location: 361388-361577 bp Feature: domain Description: TTRAP Location: 361388-361577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), VirD4 (COG3505), RVT-GII, HNHc (smart00507), DUF3991 (pfam13154), Toprim_2 (pfam13155), MobC (pfam05713), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), LPD11 (pfam18824), YtxK (COG0827)
COG4646 (Adenine-specific DNA methylase, N12 class ), TTRAP (pfam14203)