myRT

myRT report for GCA_003465985.1_ASM346598v1

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Seq: QSBI01000008.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf8, whole genome shotgun sequence (174004 bp)
Overview 1 RT 1: 12871-15909 bp 2 RT 2: 115873-120855 bp Neighborhood of RT #1 [12871, 15965] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Neighborhood of RT #2 [115873, 120854] Mob_Pre Mob_Pre Toprim_2 RVT-GII Intron_maturas2 dnaG Feature: gene Location: 12871-13089 bp Feature: domain Description: DUF4134 Location: 12892-13075 bp Feature: domain Description: DUF41 34 Location: 1 2892-1 3075 bp Feature: gene Location: 13110-13410 bp Feature: gene Location: 13706-15361 bp Feature: RT Description: RVT_N Location: 13763-14000 bp Feature: RT Description: RVT_N Location: 1 3763-1 4000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14051-14699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4051 -1 4699 bp Feature: domain Description: GIIM Note: maturase Location: 14756-14987 bp Feature: domain Description: GIIM Note: maturase Location: 1 4756-1 4987 bp Feature: gene Location: 15358-15600 bp Feature: domain Description: DUF4134 Location: 15505-15595 bp Feature: domain Description: DUF41 34 Location: 1 5505-1 5595 bp Feature: gene Location: 15630-15965 bp Feature: domain Description: DUF4133 Location: 15648-15909 bp Feature: domain Description: DUF41 33 Location: 1 5648-1 5909 bp Feature: gene Location: 115873-117219 bp Feature: domain Description: Mob_Pre Location: 115879-116344 bp Feature: domain Description: Mob_Pre Location: 1 1 5879-1 1 6344 bp Feature: domain Description: Mob_Pre Location: 116356-116509 bp Feature: domain Description: Mob_Pre Location: 1 1 6356-1 1 6509 bp Feature: gene Location: 117403-118326 bp Feature: domain Description: Toprim_2 Location: 117934-118216 bp Feature: domain Description: Toprim_2 Location: 1 1 7934-1 1 821 6 bp Feature: gene Location: 118316-120124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118580-119402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8580-1 1 9402 bp Feature: domain Description: Intron_maturas2 Location: 119471-119780 bp Feature: domain Description: Intron_maturas2 Location: 1 1 9471 -1 1 9780 bp Feature: gene Location: 120159-120582 bp Feature: gene Location: 120687-120854 bp Feature: domain Description: dnaG Location: 120756-120855 bp Feature: domain Description: dnaG Location: 1 20756-1 20855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Mob_Pre (pfam01076), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348), dnaG (TIGR01391)

Seq: QSBI01000041.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf41, whole genome shotgun sequence (55228 bp)
Overview 1 RT 1: 396-4635 bp Neighborhood of RT #1 [396, 4670] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 396-1676 bp Feature: domain Description: Mfa_like_1 Location: 468-879 bp Feature: domain Description: Mfa_like_1 Location: 468-879 bp Feature: domain Description: DUF1566 Location: 1371-1665 bp Feature: domain Description: DUF1566 Location: 1371-1665 bp Feature: gene Location: 2013-2333 bp Feature: domain Description: HTH_28 Location: 2067-2211 bp Feature: domain Description: HTH_2 8 Location: 2 067-2 2 11 bp Feature: gene Location: 2424-2621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-2619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 7-2 619 bp Feature: gene Location: 2599-2976 bp Feature: RT Description: RVT_N Location: 2602-2827 bp Feature: RT Description: RVT_N Location: 2 602 -2 82 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-2950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 881-2 950 bp Feature: gene Location: 2990-3226 bp Feature: gene Location: 3921-4670 bp Feature: domain Description: GDPD_like_2 Location: 3978-4635 bp Feature: domain Description: GDPD_like_2 Location: 3978-4635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), Mfa_like_1 (pfam13149), DUF1566 (pfam07603), GDPD_like_2 (cd08582)

Seq: QSBI01000035.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf35, whole genome shotgun sequence (74456 bp)
Overview 1 RT 1: 1749-5536 bp Neighborhood of RT #1 [1749, 5682] RVT-GII KOG1378 Feature: gene Location: 1749-1955 bp Feature: gene Location: 2091-2348 bp Feature: gene Location: 2274-3628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2610-2766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2610-2766 bp Feature: gene Location: 3918-4175 bp Feature: gene Location: 4513-5682 bp Feature: domain Description: KOG1378 Location: 4624-5536 bp Feature: domain Description: KOG13 78 Location: 4624-553 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG1378 (KOG1378, Purple acid phosphatase )

Seq: QSBI01000020.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf20, whole genome shotgun sequence (124925 bp)
Overview 1 RT 1: 90267-101613 bp Neighborhood of RT #1 [90267, 101651] Laminin_G_3 CotH RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 90267-91433 bp Feature: gene Location: 91443-98231 bp Feature: domain Description: Laminin_G_3 Location: 93879-94260 bp Feature: domain Description: Laminin_G_3 Location: 93879-94 260 bp Feature: domain Description: CotH Location: 94524-95568 bp Feature: domain Description: CotH Location: 94 524 -95568 bp Feature: gene Location: 98665-99960 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98881-99472 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98881-994 72 bp Feature: gene Location: 99962-100456 bp Feature: gene Location: 100506-101651 bp Feature: domain Description: Arm-DNA-bind_5 Location: 100530-100776 bp Feature: domain Description: Arm-DNA-bind_5 Location: 100530-100776 bp Feature: domain Description: Phage_int_SAM_5 Location: 100815-101100 bp Feature: domain Description: Phage_int_SAM_5 Location: 100815-101100 bp Feature: domain Description: INTN1_C_like Location: 101139-101613 bp Feature: domain Description: INTN1_C_like Location: 101139-101613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs

Seq: QSBI01000044.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf44, whole genome shotgun sequence (49526 bp)
Overview 1 RT 1: 37732-43774 bp Neighborhood of RT #1 [37732, 44430] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 37732-38310 bp Feature: domain Description: NGN_SP_UpxY Location: 37810-38092 bp Feature: domain Description: NGN_SP_UpxY Location: 37810-38092 bp Feature: domain Description: KOW_NusG Location: 38143-38254 bp Feature: domain Description: KOW_NusG Location: 38143-3825 4 bp Feature: gene Location: 38645-39610 bp Feature: domain Description: Phage_int_SAM_5 Location: 38678-38933 bp Feature: domain Description: Phage_int_SAM_5 Location: 38678-38933 bp Feature: domain Description: INTN1_C_like Location: 39038-39515 bp Feature: domain Description: INTN1_C_like Location: 39038-395 15 bp Feature: gene Location: 39889-42108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40090-40675 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40090-40675 bp Feature: gene Location: 42086-42730 bp Feature: gene Location: 42727-44430 bp Feature: domain Description: REC Location: 43516-43774 bp Feature: domain Description: REC Location: 435 16-43774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: QSBI01000010.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf10, whole genome shotgun sequence (167305 bp)
Overview 1 RT 1: 53927-57430 bp Neighborhood of RT #1 [53927, 57459] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 53927-54214 bp Feature: gene Location: 54419-54697 bp Feature: gene Location: 54660-56081 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55035-55737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55035-55737 bp Feature: gene Location: 56096-56503 bp Feature: domain Description: Avd_like Location: 56129-56438 bp Feature: domain Description: Avd_like Location: 56 129-56 438 bp Feature: gene Location: 56650-57459 bp Feature: domain Description: DUF1566 Location: 57181-57430 bp Feature: domain Description: DUF156 6 Location: 57181-57430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QSBI01000019.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf19, whole genome shotgun sequence (125272 bp)
Overview 1 RT 1: 48391-60821 bp Neighborhood of RT #1 [48391, 60937] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 48391-48870 bp Feature: gene Location: 49581-51743 bp Feature: gene Location: 51949-53079 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52270-52813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5227 0-52813 bp Feature: gene Location: 53081-59038 bp Feature: domain Description: DUF4011 Location: 54311-54824 bp Feature: domain Description: DUF4011 Location: 54311-54824 bp Feature: domain Description: DEXXQc_SF1 Location: 55163-56024 bp Feature: domain Description: DEXXQc_SF1 Location: 55163-56024 bp Feature: domain Description: DEXXQc_SF1 Location: 56591-57350 bp Feature: domain Description: DEXXQc_SF1 Location: 56591-57 350 bp Feature: domain Description: TIGR00376 Location: 57479-57869 bp Feature: domain Description: TIGR0037 6 Location: 57 47 9-57 869 bp Feature: domain Description: MTES_1575 Location: 58022-58307 bp Feature: domain Description: MTES_157 5 Location: 58022-58307 bp Feature: domain Description: DUF3320 Location: 58547-58688 bp Feature: domain Description: DUF3320 Location: 58547 -58688 bp Feature: gene Location: 59135-60937 bp Feature: domain Description: rpsA Location: 59204-60821 bp Feature: domain Description: rpsA Location: 59204-60821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSBI01000016.1 Bacteroides ovatus strain AF04-46 AF04-46.Scaf16, whole genome shotgun sequence (137940 bp)
Overview 1 RT 1: 7215-12101 bp Neighborhood of RT #1 [7215, 12127] DUF3875 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 7215-7385 bp Feature: domain Description: DUF3875 Location: 7224-7380 bp Feature: domain Description: DUF38 75 Location: 7224-738 0 bp Feature: gene Location: 7404-9299 bp Feature: domain Description: Bac_Flav_CT_G Location: 7407-9243 bp Feature: domain Description: Bac_Flav_CT_G Location: 7407-9243 bp Feature: gene Location: 9870-11516 bp Feature: RT Description: RVT_N Location: 9924-10167 bp Feature: RT Description: RVT_N Location: 9924-10167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10212-10857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10212-108 57 bp Feature: domain Description: GIIM Note: maturase Location: 10911-11142 bp Feature: domain Description: GIIM Note: maturase Location: 10911-11142 bp Feature: gene Location: 11660-11935 bp Feature: domain Description: Bac_Flav_CT_G Location: 11663-11933 bp Feature: domain Description: Bac_Flav_CT_G Location: 11663-11933 bp Feature: gene Location: 11942-12127 bp Feature: domain Description: Bac_Flav_CT_G Location: 11945-12101 bp Feature: domain Description: Bac_Flav_CT_G Location: 11945-12101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3875 (pfam12991), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)