myRT

myRT report for GCA_003466025.1_ASM346602v1

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Seq: QSBR01000004.1 Bacteroides thetaiotaomicron strain AF03-26 AF03-26.Scaf4, whole genome shotgun sequence (346621 bp)
Overview 1 RT 1: 307883-313008 bp Neighborhood of RT #1 [307883, 313008] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 307883-308050 bp Feature: gene Location: 308155-308578 bp Feature: gene Location: 308613-310421 bp Ori: RGX45324.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308877-309699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308877-309699 bp Feature: domain Description: Intron_maturas2 Location: 309768-310077 bp Feature: domain Description: Intron_maturas2 Location: 309768-31 0077 bp Feature: gene Location: 310411-311322 bp Ori: RGX45325.1 Feature: domain Description: Toprim_2 Location: 310945-311233 bp Feature: domain Description: Toprim_2 Location: 31 0945-31 1 233 bp Feature: gene Location: 311605-313008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSBR01000002.1 Bacteroides thetaiotaomicron strain AF03-26 AF03-26.Scaf2, whole genome shotgun sequence (519870 bp)
Overview 1 RT 1: 236623-239819 bp Neighborhood of RT #1 [236623, 239819] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 236623-236967 bp Ori: RGX46468.1 Feature: domain Description: Gp49 Location: 236677-236938 bp Feature: domain Description: Gp49 Location: 2 36677-2 36938 bp Feature: gene Location: 236972-237283 bp Ori: RGX46469.1 Feature: domain Description: HTH_XRE Location: 237086-237242 bp Feature: domain Description: HTH_XRE Location: 2 37086-2 372 42 bp Feature: gene Location: 237535-239025 bp Ori: RGX46470.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 237928-238525 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3792 8-2 3852 5 bp Feature: gene Location: 239094-239576 bp Feature: gene Location: 239583-239819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: QSBR01000001.1 Bacteroides thetaiotaomicron strain AF03-26 AF03-26.Scaf1, whole genome shotgun sequence (655854 bp)
Overview 1 RT 1: 387211-391144 bp Neighborhood of RT #1 [387211, 391144] RVT-UG27 Feature: gene Location: 387211-387858 bp Feature: gene Location: 387872-388540 bp Feature: gene Location: 388533-389795 bp Ori: RGX47380.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 388725-389361 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3 88725-3 893 61 bp Feature: gene Location: 390118-390615 bp Feature: gene Location: 390665-391144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSBR01000006.1 Bacteroides thetaiotaomicron strain AF03-26 AF03-26.Scaf6, whole genome shotgun sequence (296177 bp)
Overview 1 RT 1: 281939-290308 bp Neighborhood of RT #1 [281939, 291513] N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase Feature: gene Location: 281939-285976 bp Ori: RGX44480.1 Feature: domain Description: N6_Mtase Location: 282431-282845 bp Feature: domain Description: N6_Mtase Location: 2824 31-28284 5 bp Feature: domain Description: COG4646 Location: 283628-285371 bp Feature: domain Description: COG4 64 6 Location: 283628-285371 bp Feature: gene Location: 286465-286668 bp Feature: gene Location: 286634-288307 bp Ori: RGX44482.1 Gene: ltrA Feature: domain Description: RVT_N Location: 286688-286931 bp Feature: domain Description: RVT_N Location: 286688-286931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286976-287624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286976-287624 bp Feature: domain Description: GIIM Note: maturase Location: 287678-287909 bp Feature: domain Description: GIIM Note: maturase Location: 287678-287909 bp Feature: gene Location: 288286-289383 bp Feature: gene Location: 289624-291513 bp Ori: RGX44484.1 Feature: domain Description: KAP_NTPase Location: 289672-290308 bp Feature: domain Description: KAP_NTPase Location: 289672-290308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KAP_NTPase (pfam07693)

Seq: QSBR01000007.1 Bacteroides thetaiotaomicron strain AF03-26 AF03-26.Scaf7, whole genome shotgun sequence (280911 bp)
Overview 1 RT 1: 181385-192817 bp Neighborhood of RT #1 [181385, 192933] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Feature: gene Location: 181385-181645 bp Feature: gene Location: 181605-183764 bp Feature: gene Location: 183970-185103 bp Ori: RGX44052.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 184294-184846 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 184294-184846 bp Feature: gene Location: 185137-190965 bp Ori: RGX44053.1 Feature: domain Description: DUF4011 Location: 186292-186805 bp Feature: domain Description: DUF4011 Location: 186292-186805 bp Feature: domain Description: DEXXQc_SF1 Location: 187144-187744 bp Feature: domain Description: DEXXQc_SF1 Location: 187144-187744 bp Feature: domain Description: DEXXQc_SF1 Location: 188581-189331 bp Feature: domain Description: DEXXQc_SF1 Location: 1885 81-189331 bp Feature: domain Description: SF1_C_Upf1 Location: 189340-189853 bp Feature: domain Description: SF1_C_Upf1 Location: 189340-18985 3 bp Feature: domain Description: MTES_1575 Location: 190003-190291 bp Feature: domain Description: MTES_15 75 Location: 190003-190291 bp Feature: domain Description: DUF3320 Location: 190471-190615 bp Feature: domain Description: DUF3320 Location: 190471-190615 bp Feature: gene Location: 191134-192933 bp Ori: RGX44054.1 Feature: domain Description: rpsA Location: 191203-192817 bp Feature: domain Description: rpsA Location: 191203-192817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)