myRT

myRT report for GCA_003466285.1_ASM346628v1

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Seq: QSON01000033.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf33, whole genome shotgun sequence (36468 bp)
Overview 1 RT 1: 29283-34686 bp Neighborhood of RT #1 [29283, 35051] CpaF RVT-GII HNHc BcsQ Feature: gene Location: 29283-30203 bp Feature: gene Location: 30205-31266 bp Feature: domain Description: CpaF Location: 30232-31114 bp Feature: domain Description: CpaF Location: 30232-31 1 1 4 bp Feature: gene Location: 31363-33189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31678-32377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 678-32377 bp Feature: domain Description: HNHc Note: nucleases Location: 32926-33067 bp Feature: domain Description: HNHc Note: nucleases Location: 32926-33067 bp Feature: gene Location: 33923-34243 bp Feature: gene Location: 34227-35051 bp Feature: domain Description: BcsQ Location: 34263-34686 bp Feature: domain Description: BcsQ Location: 34263-34686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpaF (COG4962), RVT-GII, HNHc (smart00507), BcsQ (COG1192)

Seq: QSON01000008.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf8, whole genome shotgun sequence (318025 bp)
Overview 1 RT 1: 264789-267799 bp Neighborhood of RT #1 [264789, 267799] HTH_38 RVT-GII GIIM Feature: gene Location: 264789-265640 bp Feature: gene Location: 265637-265936 bp Feature: domain Description: HTH_38 Location: 265817-265904 bp Feature: domain Description: HTH_38 Location: 2 65817-2 65904 bp Feature: gene Location: 266053-267384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266308-266932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 66308-2 66932 bp Feature: domain Description: GIIM Note: maturase Location: 266989-267205 bp Feature: domain Description: GIIM Note: maturase Location: 2 66989-2 672 05 bp Feature: gene Location: 267544-267696 bp Feature: gene Location: 267713-267799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), RVT-GII, GIIM (pfam08388)

Seq: QSON01000011.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf11, whole genome shotgun sequence (208151 bp)
Overview 1 RT 1: 591-3729 bp Neighborhood of RT #1 [591, 3797] RVT-GII Intron_maturas2 Peptidase_A24 pilus_cpaB Feature: gene Location: 591-2396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1686 bp Feature: domain Description: Intron_maturas2 Location: 1758-2064 bp Feature: domain Description: Intron_maturas2 Location: 1758-2064 bp Feature: gene Location: 2522-3007 bp Feature: domain Description: Peptidase_A24 Location: 2573-2906 bp Feature: domain Description: Peptidase_A24 Location: 2573 -2906 bp Feature: gene Location: 3024-3797 bp Feature: domain Description: pilus_cpaB Location: 3060-3729 bp Feature: domain Description: pilus_cpaB Location: 3 060-3 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_A24 (pfam01478), pilus_cpaB (TIGR03177), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSON01000003.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf3, whole genome shotgun sequence (485808 bp)
Overview 1 RT 1: 361883-372788 bp 2 RT 2: 413261-418807 bp Neighborhood of RT #1 [361883, 372788] SpoVG SpoVG KOG1000 PTZ00461 RVT-GII Intron_maturas2 HNHc YtxK COG4646 Neighborhood of RT #2 [413261, 418812] pilus_cpaB Peptidase_A24 RVT-GII Intron_maturas2 Acetyltransf_10 Feature: gene Location: 361883-362500 bp Feature: domain Description: SpoVG Location: 361895-362150 bp Feature: domain Description: SpoVG Location: 361895-362150 bp Feature: domain Description: SpoVG Location: 362234-362459 bp Feature: domain Description: SpoVG Location: 362234 -3624 59 bp Feature: gene Location: 362526-363449 bp Feature: domain Description: KOG1000 Location: 362553-362730 bp Feature: domain Description: KOG1000 Location: 362553-362730 bp Feature: domain Description: PTZ00461 Location: 363006-363264 bp Feature: domain Description: PTZ004 61 Location: 363006-363264 bp Feature: gene Location: 363530-365344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363794-364616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363794 -364 616 bp Feature: domain Description: Intron_maturas2 Location: 364688-365114 bp Feature: domain Description: Intron_maturas2 Location: 364 688-365114 bp Feature: domain Description: HNHc Note: nucleases Location: 365171-365315 bp Feature: domain Description: HNHc Note: nucleases Location: 365171-365315 bp Feature: gene Location: 365897-372262 bp Feature: domain Description: YtxK Location: 368498-369176 bp Feature: domain Description: YtxK Location: 3684 98-369176 bp Feature: domain Description: COG4646 Location: 369251-371861 bp Feature: domain Description: COG4 64 6 Location: 369251-371861 bp Feature: gene Location: 372267-372788 bp Feature: gene Location: 413261-414058 bp Feature: domain Description: pilus_cpaB Location: 413357-414011 bp Feature: domain Description: pilus_cpaB Location: 4 13357-4 14 011 bp Feature: gene Location: 414248-414655 bp Feature: domain Description: Peptidase_A24 Location: 414278-414560 bp Feature: domain Description: Peptidase_A24 Location: 4 14 278-4 14 560 bp Feature: gene Location: 414877-416692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415141-415975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1514 1-4 15975 bp Feature: domain Description: Intron_maturas2 Location: 416050-416377 bp Feature: domain Description: Intron_maturas2 Location: 4 16050-4 16377 bp Feature: gene Location: 417566-417877 bp Feature: gene Location: 418363-418812 bp Feature: domain Description: Acetyltransf_10 Location: 418456-418807 bp Feature: domain Description: Acetyltransf_10 Location: 4 184 56-4 18807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PTZ00461 (isovaleryl-CoA dehydrogenase; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), pilus_cpaB (TIGR03177), Peptidase_A24 (pfam01478)
Acetyltransf_10 (pfam13673)

Seq: QSON01000001.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf1, whole genome shotgun sequence (999782 bp)
Overview 1 RT 1: 246230-251015 bp 2 RT 2: 283447-288473 bp Neighborhood of RT #1 [246230, 251062] Relaxase MobC RVT-GII GIIM HipB INT_ICEBs1_C_like Neighborhood of RT #2 [283447, 288473] PRK06545 PRK14806 RVT-Retrons DUF2871 Feature: gene Location: 246230-247582 bp Feature: domain Description: Relaxase Location: 246260-246953 bp Feature: domain Description: Relaxase Location: 246260-24695 3 bp Feature: gene Location: 247543-247872 bp Feature: domain Description: MobC Location: 247723-247840 bp Feature: domain Description: MobC Location: 247723-247840 bp Feature: gene Location: 248167-249471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248368-248986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248368-248986 bp Feature: domain Description: GIIM Note: maturase Location: 249040-249253 bp Feature: domain Description: GIIM Note: maturase Location: 249040-24925 3 bp Feature: gene Location: 249996-250355 bp Feature: domain Description: HipB Location: 250035-250251 bp Feature: domain Description: HipB Location: 25 0035 -25 025 1 bp Feature: gene Location: 250574-251062 bp Feature: domain Description: INT_ICEBs1_C_like Location: 250577-251015 bp Feature: domain Description: INT_ICEBs1_C_like Location: 25 05 77-25 1015 bp Feature: gene Location: 283447-284544 bp Feature: domain Description: PRK06545 Location: 283462-284518 bp Feature: domain Description: PRK065 45 Location: 283462-2845 18 bp Feature: gene Location: 284568-285845 bp Feature: domain Description: PRK14806 Location: 284580-285822 bp Feature: domain Description: PRK14806 Location: 2845 80-285 822 bp Feature: gene Location: 285991-287001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 286156-286711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28615 6-286711 bp Feature: gene Location: 287345-287788 bp Feature: domain Description: DUF2871 Location: 287381-287771 bp Feature: domain Description: DUF2871 Location: 287381-287771 bp Feature: gene Location: 287790-288473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), MobC (pfam05713), RVT-GII, GIIM (pfam08388), HipB (COG1396), INT_ICEBs1_C_like (cd01189), PRK06545 (prephenate dehydrogenase; Validated), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), RVT-Retrons, DUF2871 (pfam11070)