myRT

myRT report for GCA_003466305.1_ASM346630v1

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Seq: QSOU01000036.1 Bacteroides ovatus strain TM07-20 TM07-20.Scaf36, whole genome shotgun sequence (24947 bp)
Overview 1 RT 1: 11484-17008 bp Neighborhood of RT #1 [11484, 17019] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 11484-11819 bp Ori: RGJ20385.1 Feature: domain Description: DUF4133 Location: 11511-11778 bp Feature: domain Description: DUF41 33 Location: 1 1 51 1 -1 1 778 bp Feature: gene Location: 11816-12736 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 11819-12737 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 81 9-1 2737 bp Feature: gene Location: 13290-14999 bp Ori: RGJ20386.1 Gene: ltrA Feature: domain Description: RVT_N Location: 13392-13635 bp Feature: domain Description: RVT_N Location: 1 3392-1 3635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13680-14328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3680-1 4328 bp Feature: domain Description: GIIM Note: maturase Location: 14382-14613 bp Feature: domain Description: GIIM Note: maturase Location: 1 4382-1 461 3 bp Feature: gene Location: 14996-16690 bp Ori: RGJ20399.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 15116-16682 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 51 1 6-1 6682 bp Feature: gene Location: 16705-17019 bp Ori: RGJ20387.1 Feature: domain Description: DUF3876 Location: 16759-17008 bp Feature: domain Description: DUF3876 Location: 1 6759-1 7008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSOU01000030.1 Bacteroides ovatus strain TM07-20 TM07-20.Scaf30, whole genome shotgun sequence (44917 bp)
Overview 1 RT 1: 11586-17991 bp Neighborhood of RT #1 [11586, 17991] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 11586-12653 bp Ori: RGJ20748.1 Feature: domain Description: AAA_25 Location: 11721-12183 bp Feature: domain Description: AAA_2 5 Location: 1172 1-12 183 bp Feature: gene Location: 12865-13032 bp Feature: gene Location: 13596-15404 bp Ori: RGJ20749.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13860-14682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13860-14682 bp Feature: domain Description: Intron_maturas2 Location: 14751-15060 bp Feature: domain Description: Intron_maturas2 Location: 14751-15060 bp Feature: gene Location: 15394-16305 bp Ori: RGJ20750.1 Feature: domain Description: Toprim_2 Location: 15928-16216 bp Feature: domain Description: Toprim_2 Location: 1592 8-162 16 bp Feature: gene Location: 16588-17991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSOU01000009.1 Bacteroides ovatus strain TM07-20 TM07-20.Scaf9, whole genome shotgun sequence (224965 bp)
Overview 1 RT 1: 26068-30307 bp Neighborhood of RT #1 [26068, 30342] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 26068-27348 bp Ori: RGJ25714.1 Feature: domain Description: Mfa_like_1 Location: 26140-26551 bp Feature: domain Description: Mfa_like_1 Location: 26140-26551 bp Feature: domain Description: DUF1566 Location: 27037-27337 bp Feature: domain Description: DUF1566 Location: 2703 7-273 3 7 bp Feature: gene Location: 27685-27975 bp Ori: RGJ25715.1 Feature: domain Description: HTH_28 Location: 27709-27853 bp Feature: domain Description: HTH_28 Location: 27709-27853 bp Feature: gene Location: 28096-28293 bp Ori: RGJ25716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28099-28291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28099-28291 bp Feature: gene Location: 28271-28648 bp Ori: RGJ25717.1 Feature: domain Description: RVT_N Location: 28274-28499 bp Feature: domain Description: RVT_N Location: 28274-28499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28553-28622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28553 -28622 bp Feature: gene Location: 28662-28898 bp Feature: gene Location: 29593-30342 bp Ori: RGJ25719.1 Feature: domain Description: GDPD_like_2 Location: 29650-30307 bp Feature: domain Description: GDPD_like_2 Location: 29650-3 03 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: QSOU01000003.1 Bacteroides ovatus strain TM07-20 TM07-20.Scaf3, whole genome shotgun sequence (567399 bp)
Overview 1 RT 1: 51552-56204 bp Neighborhood of RT #1 [51552, 56204] VRR_NUC PRK10276 RVT-UG12 Feature: gene Location: 51552-51956 bp Ori: RGJ28567.1 Feature: domain Description: VRR_NUC Location: 51687-51915 bp Feature: domain Description: VRR_NUC Location: 51687-51915 bp Feature: gene Location: 52178-52384 bp Feature: domain Description: PRK10276 Location: 52199-52385 bp Feature: domain Description: PRK10276 Location: 52199-52385 bp Feature: gene Location: 52873-54774 bp Ori: RGJ28213.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 53233-53725 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 53233-53725 bp Feature: gene Location: 55090-55353 bp Feature: gene Location: 55641-56204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VRR_NUC (smart00990), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-UG12

Seq: QSOU01000008.1 Bacteroides ovatus strain TM07-20 TM07-20.Scaf8, whole genome shotgun sequence (248244 bp)
Overview 1 RT 1: 26090-31066 bp 2 RT 2: 199188-211728 bp Neighborhood of RT #1 [26090, 31080] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #2 [199188, 211728] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 26090-26260 bp Ori: RGJ25999.1 Feature: domain Description: DUF3875 Location: 26099-26255 bp Feature: domain Description: DUF3875 Location: 26099-2625 5 bp Feature: gene Location: 26279-28111 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 26282-28112 bp Feature: domain Description: Bac_Flav_CT_G Location: 26282-28112 bp Feature: gene Location: 28733-30544 bp Ori: RGJ26000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28997-29819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28997-29819 bp Feature: domain Description: Intron_maturas2 Location: 29894-30209 bp Feature: domain Description: Intron_maturas2 Location: 29894-30209 bp Feature: domain Description: HNHc Note: nucleases Location: 30365-30515 bp Feature: domain Description: HNHc Note: nucleases Location: 30365 -305 15 bp Feature: gene Location: 30622-30900 bp Ori: RGJ26001.1 Feature: domain Description: Bac_Flav_CT_G Location: 30640-30898 bp Feature: domain Description: Bac_Flav_CT_G Location: 30640-30898 bp Feature: gene Location: 30907-31080 bp Ori: RGJ26002.1 Feature: domain Description: Bac_Flav_CT_G Location: 30910-31066 bp Feature: domain Description: Bac_Flav_CT_G Location: 30910-31066 bp Feature: gene Location: 199188-200990 bp Ori: RGJ26127.1 Feature: domain Description: rpsA Location: 199257-200874 bp Feature: domain Description: rpsA Location: 19925 7-200874 bp Feature: gene Location: 201087-207044 bp Ori: RGJ26128.1 Feature: domain Description: DUF4011 Location: 202317-202830 bp Feature: domain Description: DUF4011 Location: 202317-202830 bp Feature: domain Description: DEXXQc_SF1 Location: 203169-204000 bp Feature: domain Description: DEXXQc_SF1 Location: 203169-204000 bp Feature: domain Description: DEXXQc_SF1 Location: 204597-205356 bp Feature: domain Description: DEXXQc_SF1 Location: 2045 97-205 35 6 bp Feature: domain Description: TIGR00376 Location: 205485-205875 bp Feature: domain Description: TIGR00376 Location: 205 485 -205 875 bp Feature: domain Description: MTES_1575 Location: 206028-206313 bp Feature: domain Description: MTES_15 75 Location: 206028-206313 bp Feature: domain Description: DUF3320 Location: 206553-206694 bp Feature: domain Description: DUF3320 Location: 2065 5 3-206694 bp Feature: gene Location: 207046-208176 bp Ori: RGJ26129.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207367-207910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207367-207910 bp Feature: gene Location: 208382-210544 bp Feature: gene Location: 211255-211728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741)
DUF3320 (pfam11784), RVT-Retrons