myRT

myRT report for GCA_003466325.1_ASM346632v1

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Seq: QSOX01000010.1 Bacteroides sp. 4_1_36 strain TM07-1 TM07-1.Scaf10, whole genome shotgun sequence (170038 bp)
Overview 1 RT 1: 2886-7719 bp Neighborhood of RT #1 [2886, 7719] HTH_17 COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 2886-3191 bp Ori: RGJ33062.1 Feature: domain Description: HTH_17 Location: 3024-3153 bp Feature: domain Description: HTH_1 7 Location: 3024-31 53 bp Feature: gene Location: 3269-3631 bp Ori: RGJ33063.1 Feature: domain Description: COG3943 Location: 3308-3557 bp Feature: domain Description: COG3943 Location: 3308-3557 bp Feature: gene Location: 3845-5653 bp Ori: RGJ33064.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 09-4931 bp Feature: domain Description: Intron_maturas2 Location: 5054-5309 bp Feature: domain Description: Intron_maturas2 Location: 5054-5309 bp Feature: gene Location: 6204-7373 bp Ori: RGJ33065.1 Feature: domain Description: Arm-DNA-bind_5 Location: 6234-6489 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6234-6489 bp Feature: domain Description: Phage_int_SAM_5 Location: 6528-6849 bp Feature: domain Description: Phage_int_SAM_5 Location: 6528-6849 bp Feature: domain Description: INTN1_C_like Location: 6888-7356 bp Feature: domain Description: INTN1 _C_like Location: 6888-7356 bp Feature: gene Location: 7489-7719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QSOX01000001.1 Bacteroides sp. 4_1_36 strain TM07-1 TM07-1.Scaf1, whole genome shotgun sequence (585693 bp)
Overview 1 RT 1: 449243-453201 bp Neighborhood of RT #1 [449243, 453201] RVT-UG27 Feature: gene Location: 449243-449722 bp Feature: gene Location: 449772-450269 bp Feature: gene Location: 450592-451857 bp Ori: RGJ37363.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 450781-451417 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 450781-451417 bp Feature: gene Location: 451875-452501 bp Feature: gene Location: 452545-453201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSOX01000055.1 Bacteroides sp. 4_1_36 strain TM07-1 TM07-1.Scaf55, whole genome shotgun sequence (2420 bp)
Overview 1 RT 1: 122-2046 bp Neighborhood of RT #1 [122, 2046] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Ori: RGJ27606.1 Gene: ltrA Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-13 97 bp Feature: gene Location: 1849-2046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSOX01000002.1 Bacteroides sp. 4_1_36 strain TM07-1 TM07-1.Scaf2, whole genome shotgun sequence (327414 bp)
Overview 1 RT 1: 193458-202959 bp Neighborhood of RT #1 [193458, 202959] RVT-DGRs Feature: gene Location: 193458-200009 bp Feature: gene Location: 200139-200372 bp Feature: gene Location: 200748-202049 bp Ori: RGJ36217.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 200961-201558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 200961-201558 bp Feature: gene Location: 202046-202531 bp Feature: gene Location: 202717-202959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs