myRT

myRT report for GCA_003466465.1_ASM346646v1

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Seq: QSPO01000031.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf31, whole genome shotgun sequence (34335 bp)
Overview 1 RT 1: 22580-27067 bp Neighborhood of RT #1 [22580, 27075] AraC Relaxase RVT-GII Intron_maturas2 HNHc Relaxase MobC Feature: gene Location: 22580-23239 bp Ori: RGJ73198.1 Feature: domain Description: AraC Location: 22898-23231 bp Feature: domain Description: AraC Location: 22898-23231 bp Feature: gene Location: 23261-23878 bp Feature: domain Description: Relaxase Location: 23267-23651 bp Feature: domain Description: Relaxase Location: 23267-23651 bp Feature: gene Location: 23984-25789 bp Ori: RGJ73199.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24248-25070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24248-25070 bp Feature: domain Description: Intron_maturas2 Location: 25148-25454 bp Feature: domain Description: Intron_maturas2 Location: 251 48-25454 bp Feature: domain Description: HNHc Note: nucleases Location: 25616-25760 bp Feature: domain Description: HNHc Note: nucleases Location: 2561 6-25760 bp Feature: gene Location: 26351-26686 bp Feature: domain Description: Relaxase Location: 26375-26687 bp Feature: domain Description: Relaxase Location: 26375-26687 bp Feature: gene Location: 26683-27075 bp Ori: RGJ73200.1 Feature: domain Description: MobC Location: 26938-27067 bp Feature: domain Description: MobC Location: 26938-27067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MobC (pfam05713)

Seq: QSPO01000007.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf7, whole genome shotgun sequence (253344 bp)
Overview 1 RT 1: 177717-181675 bp Neighborhood of RT #1 [177717, 181675] RVT-UG27 Feature: gene Location: 177717-178196 bp Feature: gene Location: 178246-178743 bp Feature: gene Location: 179066-180331 bp Ori: RGJ77738.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 179255-179891 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 1792 55-179891 bp Feature: gene Location: 180349-180975 bp Feature: gene Location: 181019-181675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSPO01000068.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf68, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 114-1581 bp Neighborhood of RT #1 [114, 1922] RVT-GII Intron_maturas2 Feature: gene Location: 114-1922 bp Ori: RGJ71609.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 78-1200 bp Feature: domain Description: Intron_maturas2 Location: 1326-1581 bp Feature: domain Description: Intron_maturas2 Location: 13 26-1581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSPO01000010.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf10, whole genome shotgun sequence (153619 bp)
Overview 1 RT 1: 111237-120738 bp Neighborhood of RT #1 [111237, 120738] RVT-DGRs Feature: gene Location: 111237-117788 bp Feature: gene Location: 117918-118151 bp Feature: gene Location: 118527-119828 bp Ori: RGJ76972.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 118740-119337 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11874 0-119337 bp Feature: gene Location: 119825-120310 bp Feature: gene Location: 120496-120738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSPO01000034.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf34, whole genome shotgun sequence (29456 bp)
Overview 1 RT 1: 3591-12345 bp Neighborhood of RT #1 [3591, 12815] KAP_NTPase TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 3591-6845 bp Ori: RGJ73057.1 Feature: domain Description: KAP_NTPase Location: 3729-4707 bp Feature: domain Description: KAP_NTPase Location: 3729-4707 bp Feature: gene Location: 6977-8191 bp Ori: RGJ73058.1 Feature: domain Description: TraG-D_C Location: 7559-7889 bp Feature: domain Description: TraG-D_C Location: 75 5 9-7889 bp Feature: gene Location: 8196-9916 bp Gene: ltrA Feature: domain Description: RVT_N Location: 8250-8493 bp Feature: domain Description: RVT_N Location: 825 0-8493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8538-9186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 38-9186 bp Feature: domain Description: GIIM Note: maturase Location: 9240-9471 bp Feature: domain Description: GIIM Note: maturase Location: 9240-9471 bp Feature: gene Location: 10631-11551 bp Feature: domain Description: YWFCY Location: 10637-10814 bp Feature: domain Description: YWFCY Location: 10637-10814 bp Feature: gene Location: 11571-12815 bp Ori: RGJ73059.1 Feature: domain Description: Relaxase Location: 11760-12345 bp Feature: domain Description: Relaxase Location: 11760-12345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: QSPO01000048.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf48, whole genome shotgun sequence (8543 bp)
Overview 1 RT 1: 1581-5613 bp Neighborhood of RT #1 [1581, 5633] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 1581-2156 bp Ori: RGJ72389.1 Feature: domain Description: TraO Location: 1656-2151 bp Feature: domain Description: TraO Location: 16 56 -2151 bp Feature: gene Location: 2159-2884 bp Ori: RGJ72390.1 Gene: traN Feature: domain Description: Bac_Flav_CT_N Location: 2303-2864 bp Feature: domain Description: Bac_Flav_CT_N Location: 2303-286 4 bp Feature: gene Location: 2856-4667 bp Ori: RGJ72391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120-3942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120-3942 bp Feature: domain Description: Intron_maturas2 Location: 4011-4320 bp Feature: domain Description: Intron_maturas2 Location: 4011-4320 bp Feature: gene Location: 4702-5189 bp Feature: gene Location: 5208-5633 bp Ori: RGJ72392.1 Feature: domain Description: Bac_Flav_CT_N Location: 5211-5613 bp Feature: domain Description: Bac_Flav_CT_N Location: 5211-56 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSPO01000012.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf12, whole genome shotgun sequence (141117 bp)
Overview 1 RT 1: 26496-31113 bp Neighborhood of RT #1 [26496, 31113] DDE_Tnp_IS66 COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 26496-28059 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27033-27210 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27 033-27 210 bp Feature: gene Location: 28121-28492 bp Ori: RGJ76527.1 Feature: domain Description: COG2865 Location: 28205-28469 bp Feature: domain Description: COG2865 Location: 28205-28469 bp Feature: gene Location: 29130-30791 bp Ori: RGJ76528.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29184-29427 bp Feature: domain Description: RVT_N Location: 29184-29427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29472-30120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2947 2-30120 bp Feature: domain Description: GIIM Note: maturase Location: 30171-30405 bp Feature: domain Description: GIIM Note: maturase Location: 3017 1-30405 bp Feature: gene Location: 30788-30871 bp Feature: gene Location: 30898-31113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSPO01000003.1 Bacteroides dorei strain TM05-24 TM05-24.Scaf3, whole genome shotgun sequence (423217 bp)
Overview 1 RT 1: 323691-329605 bp 2 RT 2: 333495-339980 bp 3 RT 3: 414214-421818 bp Neighborhood of RT #1 [323691, 329643] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [333495, 339980] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #3 [414214, 421979] dnaG RVT-UG24 INTN1_C_like Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 323691-324314 bp Feature: gene Location: 324311-324757 bp Feature: domain Description: Bac_Flav_CT_G Location: 324314-324722 bp Feature: domain Description: Bac_Flav_CT_G Location: 324314-324722 bp Feature: gene Location: 324865-326679 bp Ori: RGJ79540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325129-325951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325129-325951 bp Feature: domain Description: Intron_maturas2 Location: 326026-326344 bp Feature: domain Description: Intron_maturas2 Location: 326026-326344 bp Feature: domain Description: HNHc Note: nucleases Location: 326500-326650 bp Feature: domain Description: HNHc Note: nucleases Location: 326500-326650 bp Feature: gene Location: 327163-329323 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 327166-329248 bp Feature: domain Description: Bac_Flav_CT_G Location: 327166-329248 bp Feature: gene Location: 329320-329643 bp Ori: RGJ79541.1 Feature: domain Description: DUF4133 Location: 329335-329605 bp Feature: domain Description: DUF4133 Location: 329335-329605 bp Feature: gene Location: 333495-334757 bp Ori: RGJ79547.1 Feature: domain Description: Relaxase Location: 333636-334095 bp Feature: domain Description: Relaxase Location: 333636-334095 bp Feature: domain Description: Relaxase Location: 334305-334518 bp Feature: domain Description: Relaxase Location: 334305-334518 bp Feature: gene Location: 334820-335740 bp Feature: domain Description: YWFCY Location: 334826-335003 bp Feature: domain Description: YWFCY Location: 3348 26-335003 bp Feature: gene Location: 336380-338032 bp Ori: RGJ79548.1 Gene: ltrA Feature: domain Description: RVT_N Location: 336434-336677 bp Feature: domain Description: RVT_N Location: 336434-336677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336722-337370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336722-337370 bp Feature: domain Description: GIIM Note: maturase Location: 337424-337655 bp Feature: domain Description: GIIM Note: maturase Location: 337424-337655 bp Feature: gene Location: 338037-339272 bp Ori: RGJ79549.1 Feature: domain Description: TraG-D_C Location: 338619-338952 bp Feature: domain Description: TraG-D_C Location: 338 619-338 952 bp Feature: gene Location: 339567-339980 bp Feature: gene Location: 414214-415248 bp Ori: RGJ79598.1 Feature: domain Description: dnaG Location: 414301-415204 bp Feature: domain Description: dnaG Location: 414301-415204 bp Feature: gene Location: 415255-415995 bp Feature: gene Location: 415997-419434 bp Ori: RGJ79600.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 416507-416972 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 416507-416972 bp Feature: gene Location: 419871-420323 bp Feature: domain Description: INTN1_C_like Location: 419874-420309 bp Feature: domain Description: INTN1_C_like Location: 4198 74-420309 bp Feature: gene Location: 420648-421979 bp Ori: RGJ79601.1 Feature: domain Description: Phage_int_SAM_5 Location: 420993-421287 bp Feature: domain Description: Phage_int_SAM_5 Location: 420993-42128 7 bp Feature: domain Description: INTN1_C_like Location: 421338-421818 bp Feature: domain Description: INTN1_C_like Location: 421338 -4218 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696)
dnaG (TIGR01391), RVT-UG24, INTN1_C_like (cd01185), Phage_int_SAM_5 (pfam13102)