myRT

myRT report for GCA_003466905.1_ASM346690v1

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Seq: QSFI01000001.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf1, whole genome shotgun sequence (334084 bp)
Overview 1 RT 1: 243782-247715 bp Neighborhood of RT #1 [243782, 247715] RVT-UG27 Feature: gene Location: 243782-244261 bp Feature: gene Location: 244311-244808 bp Feature: gene Location: 245131-246393 bp Ori: RHA37401.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 245323-245959 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 245323-245959 bp Feature: gene Location: 246386-247054 bp Feature: gene Location: 247068-247715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSFI01000026.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf26, whole genome shotgun sequence (56815 bp)
Overview 1 RT 1: 22925-28860 bp Neighborhood of RT #1 [22925, 29330] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 22925-24328 bp Feature: gene Location: 24611-25522 bp Ori: RHA30562.1 Feature: domain Description: Toprim_2 Location: 25145-25433 bp Feature: domain Description: Toprim_2 Location: 2 5145-2 5433 bp Feature: gene Location: 25512-27320 bp Ori: RHA30563.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25776-26598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5776-2 6598 bp Feature: domain Description: Intron_maturas2 Location: 26667-26976 bp Feature: domain Description: Intron_maturas2 Location: 2 6667-2 6976 bp Feature: gene Location: 27884-28051 bp Feature: gene Location: 28263-29330 bp Ori: RHA30586.1 Feature: domain Description: AAA_25 Location: 28398-28860 bp Feature: domain Description: AAA_2 5 Location: 2 8398-2 8860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: QSFI01000006.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf6, whole genome shotgun sequence (131390 bp)
Overview 1 RT 1: 65334-68061 bp Neighborhood of RT #1 [65334, 68061] RVT-DGRs Feature: gene Location: 65334-65576 bp Feature: gene Location: 65756-66241 bp Feature: gene Location: 66238-67542 bp Ori: RHA35476.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66451-67045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66451-67045 bp Feature: gene Location: 67637-67871 bp Feature: gene Location: 67868-68061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSFI01000036.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf36, whole genome shotgun sequence (40328 bp)
Overview 1 RT 1: 12903-18427 bp Neighborhood of RT #1 [12903, 18438] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 12903-13238 bp Ori: RHA29045.1 Feature: domain Description: DUF4133 Location: 12930-13197 bp Feature: domain Description: DUF4 133 Location: 12930-13197 bp Feature: gene Location: 13235-14155 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 13238-14156 bp Feature: domain Description: Bac_Flav_CT_G Location: 13238-14 156 bp Feature: gene Location: 14709-16418 bp Ori: RHA29046.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14811-15054 bp Feature: domain Description: RVT_N Location: 14 811-15054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15099-15747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15099-1574 7 bp Feature: domain Description: GIIM Note: maturase Location: 15801-16032 bp Feature: domain Description: GIIM Note: maturase Location: 15801-16032 bp Feature: gene Location: 16403-18109 bp Ori: RHA29047.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 16535-18101 bp Feature: domain Description: Bac_Flav_CT_G Location: 16535-18101 bp Feature: gene Location: 18124-18438 bp Ori: RHA29048.1 Feature: domain Description: DUF3876 Location: 18178-18427 bp Feature: domain Description: DUF3876 Location: 18178-184 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSFI01000030.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf30, whole genome shotgun sequence (52449 bp)
Overview 1 RT 1: 49-6259 bp Neighborhood of RT #1 [49, 6789] RVT-GII GIIM YwqK MORN_2 YwqK TPR_2 TPR_2 TPR_2 Feature: gene Location: 49-249 bp Feature: gene Location: 343-1092 bp Feature: gene Location: 1133-2448 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-1943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-1943 bp Feature: domain Description: GIIM Note: maturase Location: 2003-2198 bp Feature: domain Description: GIIM Note: maturase Location: 2003-2198 bp Feature: gene Location: 3133-4230 bp Ori: RHA29763.1 Feature: domain Description: YwqK Location: 3340-3712 bp Feature: domain Description: YwqK Location: 3340-3712 bp Feature: domain Description: MORN_2 Location: 3724-3787 bp Feature: domain Description: MORN_2 Location: 3724-3787 bp Feature: domain Description: YwqK Location: 3928-4219 bp Feature: domain Description: YwqK Location: 3928-4219 bp Feature: gene Location: 4276-6789 bp Ori: RHA29793.1 Feature: domain Description: TPR_2 Location: 4501-4594 bp Feature: domain Description: TPR_2 Location: 45 01-45 94 bp Feature: domain Description: TPR_2 Location: 6058-6157 bp Feature: domain Description: TPR_2 Location: 605 8-615 7 bp Feature: domain Description: TPR_2 Location: 6166-6259 bp Feature: domain Description: TPR_2 Location: 6166-625 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YwqK (COG2849), MORN_2 (pfam07661), TPR_2 (pfam07719)

Seq: QSFI01000063.1 Bacteroides plebeius strain AM43-8 AM43-8.Scaf63, whole genome shotgun sequence (2388 bp)
Overview 1 RT 1: 1-1376 bp Neighborhood of RT #1 [1, 1762] RVT_N RVT-GII GIIM Feature: gene Location: 1-113 bp Feature: gene Location: 110-1762 bp Ori: RHA27186.1 Gene: ltrA Feature: domain Description: RVT_N Location: 158-401 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446 -1091 bp Feature: domain Description: GIIM Note: maturase Location: 1142-1376 bp Feature: domain Description: GIIM Note: maturase Location: 1142-1376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)