myRT

myRT report for GCA_003466925.1_ASM346692v1

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Seq: QSFJ01000003.1 Odoribacter splanchnicus strain AM43-5 AM43-5.Scaf3, whole genome shotgun sequence (340636 bp)
Overview 1 RT 1: 20259-25692 bp Neighborhood of RT #1 [20259, 26015] Dam RVT-DGRs SMC_prok_B Feature: gene Location: 20259-21102 bp Feature: domain Description: Dam Location: 20262-20610 bp Feature: domain Description: Dam Location: 20262-2061 0 bp Feature: gene Location: 21289-21699 bp Feature: gene Location: 21713-23026 bp Ori: RHA42357.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21893-22484 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 893-22484 bp Feature: gene Location: 23516-24952 bp Feature: gene Location: 24966-26015 bp Ori: RHA42359.1 Feature: domain Description: SMC_prok_B Location: 25170-25692 bp Feature: domain Description: SMC_prok_B Location: 251 70-25692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs, SMC_prok_B (TIGR02168)

Seq: QSFJ01000036.1 Odoribacter splanchnicus strain AM43-5 AM43-5.Scaf36, whole genome shotgun sequence (22558 bp)
Overview 1 RT 1: 4404-9561 bp Neighborhood of RT #1 [4404, 9635] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 4404-5030 bp Ori: RHA37721.1 Feature: domain Description: DUF4141 Location: 4416-4569 bp Feature: domain Description: DUF4141 Location: 4416-4569 bp Feature: gene Location: 5042-5488 bp Feature: domain Description: Bac_Flav_CT_G Location: 5045-5462 bp Feature: domain Description: Bac_Flav_CT_G Location: 5045-5462 bp Feature: gene Location: 5590-7401 bp Ori: RHA37722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5854-6676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5854-6676 bp Feature: domain Description: Intron_maturas2 Location: 6748-7072 bp Feature: domain Description: Intron_maturas2 Location: 6748-7072 bp Feature: domain Description: HNHc Note: nucleases Location: 7210-7372 bp Feature: domain Description: HNHc Note: nucleases Location: 72 10-7372 bp Feature: gene Location: 7949-8108 bp Feature: gene Location: 8400-9635 bp Ori: RHA37723.1 Feature: domain Description: Arm-DNA-bind_5 Location: 8427-8685 bp Feature: domain Description: Arm-DNA-bind_5 Location: 842 7-8685 bp Feature: domain Description: Phage_int_SAM_5 Location: 8724-9039 bp Feature: domain Description: Phage_int_SAM_5 Location: 872 4-9039 bp Feature: domain Description: INTN1_C_like Location: 9081-9561 bp Feature: domain Description: INTN1_C_like Location: 9081-9561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QSFJ01000005.1 Odoribacter splanchnicus strain AM43-5 AM43-5.Scaf5, whole genome shotgun sequence (285230 bp)
Overview 1 RT 1: 134001-139525 bp Neighborhood of RT #1 [134001, 139536] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 134001-134336 bp Ori: RHA41797.1 Feature: domain Description: DUF4133 Location: 134028-134295 bp Feature: domain Description: DUF413 3 Location: 13 4028-13 4295 bp Feature: gene Location: 134333-135253 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 134336-135254 bp Feature: domain Description: Bac_Flav_CT_G Location: 13 43 3 6-13 5254 bp Feature: gene Location: 135807-137516 bp Ori: RHA41798.1 Gene: ltrA Feature: domain Description: RVT_N Location: 135909-136152 bp Feature: domain Description: RVT_N Location: 13 5909-13 6152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136197-136845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 6197-13 6845 bp Feature: domain Description: GIIM Note: maturase Location: 136899-137130 bp Feature: domain Description: GIIM Note: maturase Location: 13 6899-13 713 0 bp Feature: gene Location: 137501-139207 bp Ori: RHA41799.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 137633-139199 bp Feature: domain Description: Bac_Flav_CT_G Location: 13 763 3 -13 9199 bp Feature: gene Location: 139222-139536 bp Ori: RHA41800.1 Feature: domain Description: DUF3876 Location: 139276-139525 bp Feature: domain Description: DUF3 876 Location: 13 9276-13 9525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSFJ01000002.1 Odoribacter splanchnicus strain AM43-5 AM43-5.Scaf2, whole genome shotgun sequence (376215 bp)
Overview 1 RT 1: 323476-327409 bp Neighborhood of RT #1 [323476, 327409] RVT-UG27 Feature: gene Location: 323476-324123 bp Feature: gene Location: 324137-324805 bp Feature: gene Location: 324798-326060 bp Ori: RHA42974.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 324990-325626 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 324 990-325626 bp Feature: gene Location: 326383-326880 bp Feature: gene Location: 326930-327409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27