myRT

myRT report for GCA_003467165.1_ASM346716v1

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Seq: QSFG01000002.1 Bacteroides plebeius strain AM43-9BH AM43-9BH.Scaf2, whole genome shotgun sequence (334084 bp)
Overview 1 RT 1: 244507-247715 bp Neighborhood of RT #1 [244507, 247715] RVT-UG27 Feature: gene Location: 244507-244785 bp Feature: gene Location: 244815-245081 bp Feature: gene Location: 245131-246393 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 245323-245959 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 245323-245959 bp Feature: gene Location: 246386-247054 bp Feature: gene Location: 247068-247715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSFG01000030.1 Bacteroides plebeius strain AM43-9BH AM43-9BH.Scaf30, whole genome shotgun sequence (52449 bp)
Overview 1 RT 1: 343-4219 bp Neighborhood of RT #1 [343, 4230] RVT-GII GIIM YwqK MORN_2 YwqK Feature: gene Location: 343-1092 bp Feature: gene Location: 1207-2448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402 -2 017 bp Feature: domain Description: GIIM Note: maturase Location: 2077-2272 bp Feature: domain Description: GIIM Note: maturase Location: 2 077-2 2 72 bp Feature: gene Location: 2630-2983 bp Feature: gene Location: 3133-4230 bp Feature: domain Description: YwqK Location: 3340-3712 bp Feature: domain Description: YwqK Location: 3340-3712 bp Feature: domain Description: MORN_2 Location: 3724-3787 bp Feature: domain Description: MORN_2 Location: 372 4-3787 bp Feature: domain Description: YwqK Location: 3928-4219 bp Feature: domain Description: YwqK Location: 392 8-42 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YwqK (COG2849), MORN_2 (pfam07661)

Seq: QSFG01000049.1 Bacteroides plebeius strain AM43-9BH AM43-9BH.Scaf49, whole genome shotgun sequence (12726 bp)
Overview 1 RT 1: 8394-12231 bp Neighborhood of RT #1 [8394, 12617] SMI1_KNR4 DKNYY DKNYY RVT_N RVT-GII GIIM Feature: gene Location: 8394-8951 bp Feature: domain Description: SMI1_KNR4 Location: 8505-8865 bp Feature: domain Description: SMI1_KNR4 Location: 8505-8865 bp Feature: gene Location: 9024-10073 bp Feature: domain Description: DKNYY Location: 9165-9408 bp Feature: domain Description: DKNYY Location: 9165-9408 bp Feature: domain Description: DKNYY Location: 9522-10020 bp Feature: domain Description: DKNYY Location: 9522-10020 bp Feature: gene Location: 10812-12617 bp Feature: domain Description: RVT_N Location: 11013-11256 bp Feature: domain Description: RVT_N Location: 11013 -11256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11301-11946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 01-11946 bp Feature: domain Description: GIIM Note: maturase Location: 11997-12231 bp Feature: domain Description: GIIM Note: maturase Location: 11997-1223 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMI1_KNR4 (smart00860), DKNYY (pfam13644), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSFG01000006.1 Bacteroides plebeius strain AM43-9BH AM43-9BH.Scaf6, whole genome shotgun sequence (153699 bp)
Overview 1 RT 1: 22925-27753 bp Neighborhood of RT #1 [22925, 27753] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 22925-24328 bp Feature: gene Location: 24611-25540 bp Feature: domain Description: Toprim_2 Location: 25163-25451 bp Feature: domain Description: Toprim_2 Location: 25163-254 51 bp Feature: gene Location: 25512-27320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25776-26598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25776-26598 bp Feature: domain Description: Intron_maturas2 Location: 26667-26976 bp Feature: domain Description: Intron_maturas2 Location: 26667-26976 bp Feature: gene Location: 27322-27504 bp Feature: gene Location: 27610-27753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSFG01000009.1 Bacteroides plebeius strain AM43-9BH AM43-9BH.Scaf9, whole genome shotgun sequence (131769 bp)
Overview 1 RT 1: 65713-71035 bp Neighborhood of RT #1 [65713, 75156] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 65713-65955 bp Feature: gene Location: 66135-66620 bp Feature: gene Location: 66617-67921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66830-67424 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66830-67424 bp Feature: gene Location: 68023-68241 bp Feature: gene Location: 68437-75156 bp Feature: domain Description: Laminin_G_3 Location: 69880-69958 bp Feature: domain Description: Laminin_G_3 Location: 69880-6995 8 bp Feature: domain Description: Laminin_G_3 Location: 70609-71035 bp Feature: domain Description: Laminin_G_3 Location: 70609-71035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)