myRT

myRT report for GCA_003467215.1_ASM346721v1

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Seq: QSFT01000046.1 Bacteroides coprophilus strain AM42-38 AM42-38.Scaf46, whole genome shotgun sequence (17511 bp)
Overview 1 RT 1: 4125-8608 bp Neighborhood of RT #1 [4125, 8608] Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 4125-5135 bp Feature: domain Description: Bac_Flav_CT_G Location: 4128-4419 bp Feature: domain Description: Bac_Flav_CT_G Location: 41 28-441 9 bp Feature: domain Description: Bac_Flav_CT_G Location: 4815-5130 bp Feature: domain Description: Bac_Flav_CT_G Location: 481 5-51 30 bp Feature: gene Location: 5328-5675 bp Feature: gene Location: 5713-7260 bp Feature: domain Description: RVT_N Location: 5812-6055 bp Feature: domain Description: RVT_N Location: 581 2-6055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6100-6748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 00-6748 bp Feature: domain Description: GIIM Note: maturase Location: 6799-7033 bp Feature: domain Description: GIIM Note: maturase Location: 6799-7033 bp Feature: gene Location: 7416-8069 bp Feature: domain Description: Bac_Flav_CT_G Location: 7533-7986 bp Feature: domain Description: Bac_Flav_CT_G Location: 7533-7986 bp Feature: gene Location: 8063-8608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSFT01000057.1 Bacteroides coprophilus strain AM42-38 AM42-38.Scaf57, whole genome shotgun sequence (6325 bp)
Overview 1 RT 1: 117-6237 bp Neighborhood of RT #1 [117, 6272] DnaG RVT-UG24 COG5340 AbiEii Feature: gene Location: 117-860 bp Feature: domain Description: DnaG Location: 192-834 bp Feature: domain Description: DnaG Location: 192 -834 bp Feature: gene Location: 862-1602 bp Feature: gene Location: 1583-5008 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2087-2552 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 2 087-2 552 bp Feature: gene Location: 5332-5895 bp Feature: domain Description: COG5340 Location: 5416-5860 bp Feature: domain Description: COG5340 Location: 5416-5860 bp Feature: gene Location: 5892-6272 bp Feature: domain Description: AbiEii Location: 6009-6237 bp Feature: domain Description: AbiEii Location: 6009-62 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaG (COG0358), RVT-UG24, COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843)

Seq: QSFT01000007.1 Bacteroides coprophilus strain AM42-38 AM42-38.Scaf7, whole genome shotgun sequence (134020 bp)
Overview 1 RT 1: 58516-61336 bp Neighborhood of RT #1 [58516, 61336] RVT-DGRs Feature: gene Location: 58516-58749 bp Feature: gene Location: 58771-59028 bp Feature: gene Location: 59125-60426 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59338-59935 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 593 3 8-5993 5 bp Feature: gene Location: 60459-60908 bp Feature: gene Location: 61094-61336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs