myRT

myRT report for GCA_003467265.1_ASM346726v1

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Seq: QSFX01000012.1 Roseburia inulinivorans strain AM42-1AC AM42-1AC.Scaf12, whole genome shotgun sequence (87286 bp)
Overview 1 RT 1: 10063-14616 bp Neighborhood of RT #1 [10063, 14633] RVT-UG8 DUF2971 COG2865 Feature: gene Location: 10063-10464 bp Feature: gene Location: 10467-10625 bp Feature: gene Location: 10751-12808 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11291-11732 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 291 -1 1 732 bp Feature: gene Location: 12824-13768 bp Feature: domain Description: DUF2971 Location: 13286-13571 bp Feature: domain Description: DUF2971 Location: 1 3286-1 3571 bp Feature: gene Location: 13938-14633 bp Feature: domain Description: COG2865 Location: 13962-14616 bp Feature: domain Description: COG2865 Location: 1 3962-1 461 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, DUF2971 (pfam11185), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: QSFX01000036.1 Roseburia inulinivorans strain AM42-1AC AM42-1AC.Scaf36, whole genome shotgun sequence (46543 bp)
Overview 1 RT 1: 41733-46378 bp Neighborhood of RT #1 [41733, 46449] recD_rel RVT-GII GIIM Feature: gene Location: 41733-43940 bp Feature: domain Description: recD_rel Location: 41748-43923 bp Feature: domain Description: recD_rel Location: 41748-4392 3 bp Feature: gene Location: 44894-45100 bp Feature: gene Location: 45151-46449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45406-46099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45406-46099 bp Feature: domain Description: GIIM Note: maturase Location: 46159-46378 bp Feature: domain Description: GIIM Note: maturase Location: 46159-46378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recD_rel (TIGR01448), RVT-GII, GIIM (pfam08388)

Seq: QSFX01000005.1 Roseburia inulinivorans strain AM42-1AC AM42-1AC.Scaf5, whole genome shotgun sequence (142718 bp)
Overview 1 RT 1: 123421-131315 bp Neighborhood of RT #1 [123421, 131419] DUF4145 HsdR RVT-UG3 Integrase_DNA Phage_int_SAM_5 INT_ICEBs1_C_like HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 123421-126837 bp Feature: domain Description: DUF4145 Location: 123493-123766 bp Feature: domain Description: DUF4145 Location: 123 493 -123 766 bp Feature: domain Description: HsdR Location: 124033-126736 bp Feature: domain Description: HsdR Location: 12403 3 -12673 6 bp Feature: gene Location: 126842-127447 bp Feature: gene Location: 127473-128735 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 127773-128238 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 127773 -12823 8 bp Feature: gene Location: 128806-129999 bp Feature: domain Description: Integrase_DNA Location: 128809-129019 bp Feature: domain Description: Integrase_DNA Location: 128809-129019 bp Feature: domain Description: Phage_int_SAM_5 Location: 129094-129328 bp Feature: domain Description: Phage_int_SAM_5 Location: 129094-1293 28 bp Feature: domain Description: INT_ICEBs1_C_like Location: 129388-129952 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1293 88-129952 bp Feature: gene Location: 130277-131419 bp Feature: domain Description: HTH_XRE Location: 130307-130451 bp Feature: domain Description: HTH_XRE Location: 13 03 07-13 0451 bp Feature: domain Description: Rol_Rep_N Location: 130481-130745 bp Feature: domain Description: Rol_Rep_N Location: 13 0481-13 0745 bp Feature: domain Description: Rep_trans Location: 130769-131315 bp Feature: domain Description: Rep_trans Location: 13 0769-13 13 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), HsdR (COG4096), RVT-UG3, Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: QSFX01000085.1 Roseburia inulinivorans strain AM42-1AC AM42-1AC.Scaf85, whole genome shotgun sequence (1935 bp)
Overview 1 RT 1: 102-1910 bp Neighborhood of RT #1 [102, 1910] RVT-GII GIIM Feature: gene Location: 102-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1026 bp Feature: domain Description: GIIM Note: maturase Location: 1107-1332 bp Feature: domain Description: GIIM Note: maturase Location: 1107-1332 bp Feature: gene Location: 1656-1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)