myRT

myRT report for GCA_003467505.1_ASM346750v1

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Seq: QSHA01000013.1 Bacteroides uniformis strain AM39-1 AM39-1.Scaf13, whole genome shotgun sequence (140219 bp)
Overview 1 RT 1: 87545-92734 bp 2 RT 2: 118954-128910 bp Neighborhood of RT #1 [87545, 92748] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [118954, 129107] DUF1896 N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C YhcG Feature: gene Location: 87545-87859 bp Feature: domain Description: DUF3876 Location: 87599-87848 bp Feature: domain Description: DUF3876 Location: 87599-87848 bp Feature: gene Location: 87874-89568 bp Feature: domain Description: Bac_Flav_CT_G Location: 87994-89560 bp Feature: domain Description: Bac_Flav_CT_G Location: 87994-89560 bp Feature: gene Location: 89565-91226 bp Feature: RT Description: RVT_N Location: 89619-89862 bp Feature: RT Description: RVT_N Location: 8961 9-89862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89907-90555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89907-90555 bp Feature: domain Description: GIIM Note: maturase Location: 90609-90840 bp Feature: domain Description: GIIM Note: maturase Location: 90609-90840 bp Feature: gene Location: 91308-91688 bp Feature: gene Location: 91810-92748 bp Feature: domain Description: Bac_Flav_CT_G Location: 91813-92734 bp Feature: domain Description: Bac_Flav_CT_G Location: 91 81 3-92734 bp Feature: gene Location: 118954-119403 bp Feature: domain Description: DUF1896 Location: 118984-119392 bp Feature: domain Description: DUF1 896 Location: 1 1 8984-1 1 9392 bp Feature: gene Location: 119390-122875 bp Feature: domain Description: N6_Mtase Location: 119681-120320 bp Feature: domain Description: N6_Mtase Location: 1 1 9681 -1 20320 bp Feature: domain Description: COG4646 Location: 121928-122864 bp Feature: domain Description: COG4646 Location: 1 21 928-1 22864 bp Feature: gene Location: 123428-125230 bp Feature: domain Description: matK Location: 123497-123584 bp Feature: domain Description: matK Location: 1 23497-1 23584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123692-124514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23692-1 2451 4 bp Feature: domain Description: Intron_maturas2 Location: 124664-124898 bp Feature: domain Description: Intron_maturas2 Location: 1 24664-1 24898 bp Feature: gene Location: 125217-127994 bp Feature: domain Description: COG4646 Location: 125331-126468 bp Feature: domain Description: COG4646 Location: 1 25331 -1 26468 bp Feature: domain Description: Helicase_C Location: 126666-126885 bp Feature: domain Description: Helicase_C Location: 1 26666-1 26885 bp Feature: gene Location: 128058-129107 bp Feature: domain Description: YhcG Location: 128427-128910 bp Feature: domain Description: YhcG Location: 1 28427-1 2891 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), Intron_maturas2 (pfam01348)
Helicase_C (pfam00271), YhcG (COG4804)

Seq: QSHA01000003.1 Bacteroides uniformis strain AM39-1 AM39-1.Scaf3, whole genome shotgun sequence (418233 bp)
Overview 1 RT 1: 20222-22958 bp Neighborhood of RT #1 [20222, 22958] RVT_N RVT-GII GIIM Feature: gene Location: 20222-20425 bp Feature: gene Location: 20451-20585 bp Feature: gene Location: 20987-22489 bp Feature: RT Description: RVT_N Location: 21053-21296 bp Feature: RT Description: RVT_N Location: 2 1053-2 12 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21341-21983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1341-2 1983 bp Feature: domain Description: GIIM Note: maturase Location: 22040-22271 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 040-2 2 2 71 bp Feature: gene Location: 22575-22805 bp Feature: gene Location: 22812-22958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)