myRT

myRT report for GCA_003467565.1_ASM346756v1

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Seq: QSHD01000015.1 Bacteroides vulgatus strain AM38-19 AM38-19.Scaf15, whole genome shotgun sequence (126074 bp)
Overview 1 RT 1: 115732-118552 bp Neighborhood of RT #1 [115732, 118552] RVT-DGRs Feature: gene Location: 115732-115965 bp Feature: gene Location: 115987-116244 bp Feature: gene Location: 116341-117642 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116554-117148 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 6554-1 1 71 48 bp Feature: gene Location: 117675-118124 bp Feature: gene Location: 118310-118552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSHD01000016.1 Bacteroides vulgatus strain AM38-19 AM38-19.Scaf16, whole genome shotgun sequence (115327 bp)
Overview 1 RT 1: 32809-42271 bp Neighborhood of RT #1 [32809, 42271] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 32809-39546 bp Feature: domain Description: Laminin_G_3 Location: 34270-34348 bp Feature: domain Description: Laminin_G_3 Location: 342 70-34348 bp Feature: domain Description: Laminin_G_3 Location: 34999-35425 bp Feature: domain Description: Laminin_G_3 Location: 34999-3542 5 bp Feature: gene Location: 39791-39946 bp Feature: gene Location: 40063-41367 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40276-40870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 402 76-40870 bp Feature: gene Location: 41364-41849 bp Feature: gene Location: 42029-42271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: QSHD01000018.1 Bacteroides vulgatus strain AM38-19 AM38-19.Scaf18, whole genome shotgun sequence (107872 bp)
Overview 1 RT 1: 100445-106003 bp Neighborhood of RT #1 [100445, 106059] RVT-DGRs Dam Feature: gene Location: 100445-101344 bp Feature: gene Location: 101358-102794 bp Feature: gene Location: 103153-104625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103492-104083 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103 492-104083 bp Feature: gene Location: 104639-105049 bp Feature: gene Location: 105232-106059 bp Feature: domain Description: Dam Location: 105235-106003 bp Feature: domain Description: Dam Location: 10523 5-106003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: QSHD01000002.1 Bacteroides vulgatus strain AM38-19 AM38-19.Scaf2, whole genome shotgun sequence (248503 bp)
Overview 1 RT 1: 55758-63114 bp Neighborhood of RT #1 [55758, 65966] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 Feature: gene Location: 55758-56903 bp Feature: domain Description: Arm-DNA-bind_5 Location: 55782-56028 bp Feature: domain Description: Arm-DNA-bind_5 Location: 55782-56028 bp Feature: domain Description: Phage_int_SAM_5 Location: 56067-56352 bp Feature: domain Description: Phage_int_SAM_5 Location: 56067-56352 bp Feature: domain Description: INTN1_C_like Location: 56391-56865 bp Feature: domain Description: INTN1_C_like Location: 56391-56865 bp Feature: gene Location: 56953-57447 bp Feature: gene Location: 57449-58804 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57725-58316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57725-58316 bp Feature: gene Location: 58949-59116 bp Feature: gene Location: 59178-65966 bp Feature: domain Description: Laminin_G_3 Location: 61614-61995 bp Feature: domain Description: Laminin_G_3 Location: 61614 -61995 bp Feature: domain Description: pfam08757 Location: 62790-63114 bp Feature: domain Description: pfam08757 Location: 62790-63114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein)

Seq: QSHD01000036.1 Bacteroides vulgatus strain AM38-19 AM38-19.Scaf36, whole genome shotgun sequence (43753 bp)
Overview 1 RT 1: 24-2767 bp Neighborhood of RT #1 [24, 2778] RVT-GII matK HNHc DUF3873 Feature: gene Location: 24-179 bp Feature: gene Location: 172-2007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1288 bp Feature: domain Description: matK Location: 1465-1678 bp Feature: domain Description: matK Location: 1465 -1678 bp Feature: domain Description: HNHc Note: nucleases Location: 1840-1981 bp Feature: domain Description: HNHc Note: nucleases Location: 1840-1981 bp Feature: gene Location: 2327-2488 bp Feature: gene Location: 2557-2778 bp Feature: domain Description: DUF3873 Location: 2566-2767 bp Feature: domain Description: DUF3873 Location: 25 66-2767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)