myRT

myRT report for GCA_003467625.1_ASM346762v1

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Seq: QSHH01000005.1 [Ruminococcus] gnavus strain AM38-12 AM38-12.Scaf5, whole genome shotgun sequence (194456 bp)
Overview 1 RT 1: 95431-99151 bp 2 RT 2: 101695-106644 bp Neighborhood of RT #1 [95431, 99151] DUF3847 Ssb RVT-GII GIIM Neighborhood of RT #2 [101695, 106703] HTH_32 rve pepcterm_ATPase RVT-GII COG3666 DDE_Tnp_1_6 Feature: gene Location: 95431-96102 bp Feature: domain Description: DUF3847 Location: 95731-95968 bp Feature: domain Description: DUF3847 Location: 95731 -95968 bp Feature: gene Location: 96056-96460 bp Feature: domain Description: Ssb Location: 96059-96398 bp Feature: domain Description: Ssb Location: 96059-96398 bp Feature: gene Location: 96737-98128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97052-97676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97052-97676 bp Feature: domain Description: GIIM Note: maturase Location: 97733-97949 bp Feature: domain Description: GIIM Note: maturase Location: 97733-97949 bp Feature: gene Location: 98166-98321 bp Feature: gene Location: 98720-99151 bp Feature: gene Location: 101695-102948 bp Feature: domain Description: HTH_32 Location: 101875-102103 bp Feature: domain Description: HTH_32 Location: 1 01 875-1 021 03 bp Feature: domain Description: rve Location: 102169-102526 bp Feature: domain Description: rve Location: 1 021 69-1 02526 bp Feature: gene Location: 102930-103754 bp Feature: domain Description: pepcterm_ATPase Location: 102960-103743 bp Feature: domain Description: pepcterm_ATPase Location: 1 02960-1 03743 bp Feature: gene Location: 103839-104300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104043-104220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04043-1 04220 bp Feature: gene Location: 104399-104782 bp Feature: gene Location: 104901-106703 bp Feature: domain Description: COG3666 Location: 105030-105438 bp Feature: domain Description: COG3666 Location: 1 05030-1 05438 bp Feature: domain Description: DDE_Tnp_1_6 Location: 106251-106644 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 06251 -1 06644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3847 (pfam12958), Ssb (COG0629), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665), pepcterm_ATPase (TIGR03015), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)