myRT

myRT report for GCA_003467665.1_ASM346766v1

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Seq: QSHK01000012.1 Dorea formicigenerans strain AM37-5 AM37-5.Scaf12, whole genome shotgun sequence (106984 bp)
Overview 1 RT 1: 41818-44697 bp Neighborhood of RT #1 [41818, 44697] RVT_N RVT-GII Feature: gene Location: 41818-41952 bp Feature: gene Location: 42128-42292 bp Feature: gene Location: 42450-43865 bp Feature: domain Description: RVT_N Location: 42495-42735 bp Feature: domain Description: RVT_N Location: 42495-42735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42783-43542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42783-43542 bp Feature: gene Location: 43837-44232 bp Feature: gene Location: 44395-44697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QSHK01000002.1 Dorea formicigenerans strain AM37-5 AM37-5.Scaf2, whole genome shotgun sequence (417757 bp)
Overview 1 RT 1: 237589-260053 bp Neighborhood of RT #1 [237589, 260265] RES RVT-UNC YodL LPD18 DUF4316 TTRAP ArdC YodL DUF3849 LPD18 LPD16 LPD16 RVT_N RVT-GII YkfC YtxK COG4646 KOG1000 PRK07726 Feature: gene Location: 237589-237795 bp Feature: gene Location: 238191-239354 bp Feature: domain Description: RES Location: 238443-238806 bp Feature: domain Description: RES Location: 2 38443-2 38806 bp Feature: gene Location: 239411-240958 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 239843-240113 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 39843-2 40113 bp Feature: gene Location: 241090-242010 bp Feature: domain Description: YodL Location: 241105-241402 bp Feature: domain Description: YodL Location: 2 41105-2 41402 bp Feature: domain Description: LPD18 Location: 241423-241675 bp Feature: domain Description: LPD18 Location: 2 4142 3-2 41675 bp Feature: domain Description: DUF4316 Location: 241792-241921 bp Feature: domain Description: DUF4316 Location: 2 41792 -2 4192 1 bp Feature: gene Location: 242007-242258 bp Feature: domain Description: TTRAP Location: 242031-242205 bp Feature: domain Description: TTRAP Location: 2 42 031-2 42 2 05 bp Feature: gene Location: 242255-247591 bp Feature: domain Description: ArdC Location: 242477-243068 bp Feature: domain Description: ArdC Location: 2 42 477-2 43068 bp Feature: domain Description: YodL Location: 244295-244586 bp Feature: domain Description: YodL Location: 2 442 95-2 44586 bp Feature: domain Description: DUF3849 Location: 244643-245018 bp Feature: domain Description: DUF3849 Location: 2 44643-2 45018 bp Feature: domain Description: LPD18 Location: 245057-245303 bp Feature: domain Description: LPD18 Location: 2 45057-2 45303 bp Feature: domain Description: LPD16 Location: 245813-246041 bp Feature: domain Description: LPD16 Location: 2 45813-2 46041 bp Feature: domain Description: LPD16 Location: 246167-246368 bp Feature: domain Description: LPD16 Location: 2 46167-2 46368 bp Feature: gene Location: 247631-248689 bp Feature: gene Location: 248690-250360 bp Feature: domain Description: RVT_N Location: 248735-248978 bp Feature: domain Description: RVT_N Location: 2 48735-2 48978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249023-249671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4902 3-2 49671 bp Feature: domain Description: YkfC Location: 249779-249974 bp Feature: domain Description: YkfC Location: 2 49779-2 49974 bp Feature: gene Location: 250939-258150 bp Feature: domain Description: YtxK Location: 254233-255028 bp Feature: domain Description: YtxK Location: 2 542 33-2 5502 8 bp Feature: domain Description: COG4646 Location: 255094-257653 bp Feature: domain Description: COG4646 Location: 2 55094-2 57653 bp Feature: domain Description: KOG1000 Location: 258007-258133 bp Feature: domain Description: KOG1000 Location: 2 58007-2 58133 bp Feature: gene Location: 258169-260265 bp Feature: domain Description: PRK07726 Location: 258184-260053 bp Feature: domain Description: PRK0772 6 Location: 2 58184-2 60053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), RVT-UG12/RVT-UG8/RVT-AbiP2/RVT-UG14(RVT-UNC), YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), TTRAP (pfam14203), ArdC (COG4227), DUF3849 (pfam12960), LPD16 (pfam18830), RVT_N (pfam13655)
RVT-GII, YkfC (COG3344), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PRK07726 (DNA topoisomerase 3)

Seq: QSHK01000029.1 Dorea formicigenerans strain AM37-5 AM37-5.Scaf29, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 105-1915 bp Neighborhood of RT #1 [105, 1915] RVT-GII GIIM Feature: gene Location: 105-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 96-1029 bp Feature: domain Description: GIIM Note: maturase Location: 1110-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1110-13 26 bp Feature: gene Location: 1486-1695 bp Feature: gene Location: 1766-1915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSHK01000006.1 Dorea formicigenerans strain AM37-5 AM37-5.Scaf6, whole genome shotgun sequence (167786 bp)
Overview 1 RT 1: 16187-25910 bp Neighborhood of RT #1 [16187, 25921] SpaA CollagenBindB SpaA RVT-GII HTH_30 IscR HDGYP Feature: gene Location: 16187-22318 bp Feature: domain Description: SpaA Location: 20639-20843 bp Feature: domain Description: SpaA Location: 20639-2084 3 bp Feature: domain Description: CollagenBindB Location: 21017-21239 bp Feature: domain Description: CollagenBindB Location: 21017-21239 bp Feature: domain Description: SpaA Location: 21434-21689 bp Feature: domain Description: SpaA Location: 214 34 -21689 bp Feature: gene Location: 22339-22743 bp Feature: gene Location: 22968-23657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23178-23403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23178-234 03 bp Feature: domain Description: HTH_30 Location: 23460-23616 bp Feature: domain Description: HTH_30 Location: 234 60-23616 bp Feature: gene Location: 24009-24329 bp Feature: gene Location: 24461-25921 bp Feature: domain Description: IscR Location: 24464-24866 bp Feature: domain Description: IscR Location: 24 4 64 -24 866 bp Feature: domain Description: HDGYP Location: 25166-25910 bp Feature: domain Description: HDGYP Location: 25166-25910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpaA (pfam17802), CollagenBindB (cl15753), RVT-GII, HTH_30 (pfam13556), IscR (TIGR02010), HDGYP (COG2206)