myRT

myRT report for GCA_003467845.1_ASM346784v1

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Seq: QSHY01000010.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf10, whole genome shotgun sequence (191110 bp)
Overview 1 RT 1: 4378-8993 bp Neighborhood of RT #1 [4378, 8993] pilus_cpaB Peptidase_A24 RVT-GII Intron_maturas2 Feature: gene Location: 4378-5175 bp Feature: domain Description: pilus_cpaB Location: 4474-5128 bp Feature: domain Description: pilus_cpaB Location: 4474-51 28 bp Feature: gene Location: 5365-5772 bp Feature: domain Description: Peptidase_A24 Location: 5395-5677 bp Feature: domain Description: Peptidase_A24 Location: 5395-5677 bp Feature: gene Location: 6123-7871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6450-7284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6450-7284 bp Feature: domain Description: Intron_maturas2 Location: 7359-7686 bp Feature: domain Description: Intron_maturas2 Location: 7359-7686 bp Feature: gene Location: 8282-8530 bp Feature: gene Location: 8760-8993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pilus_cpaB (TIGR03177), Peptidase_A24 (pfam01478), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSHY01000011.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf11, whole genome shotgun sequence (170935 bp)
Overview 1 RT 1: 54069-59038 bp 2 RT 2: 61840-66086 bp 3 RT 3: 77256-86963 bp Neighborhood of RT #1 [54069, 59038] TadB CpaF RVT-GII HNHc Neighborhood of RT #2 [61840, 66086] SpoVG RVT-GII HNHc Neighborhood of RT #3 [77256, 87676] COG4646 KOG1000 COG4646 RVT-GII HNHc ParB_N_like Feature: gene Location: 54069-55001 bp Feature: domain Description: TadB Location: 54225-54504 bp Feature: domain Description: TadB Location: 542 2 5-54504 bp Feature: gene Location: 54998-56104 bp Feature: domain Description: CpaF Location: 55058-55955 bp Feature: domain Description: CpaF Location: 55058-55955 bp Feature: gene Location: 56153-57979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56468-57167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56468-57167 bp Feature: domain Description: HNHc Note: nucleases Location: 57716-57857 bp Feature: domain Description: HNHc Note: nucleases Location: 57716-57857 bp Feature: gene Location: 58535-58666 bp Feature: gene Location: 58712-59038 bp Feature: gene Location: 61840-62682 bp Feature: gene Location: 62713-63261 bp Feature: domain Description: SpoVG Location: 63004-63229 bp Feature: domain Description: SpoVG Location: 63004-632 2 9 bp Feature: gene Location: 63522-65393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63837-64563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63837-64563 bp Feature: domain Description: HNHc Note: nucleases Location: 65115-65283 bp Feature: domain Description: HNHc Note: nucleases Location: 65115-652 83 bp Feature: gene Location: 65472-65729 bp Feature: gene Location: 65937-66086 bp Feature: gene Location: 77256-80969 bp Feature: domain Description: COG4646 Location: 77400-79659 bp Feature: domain Description: COG4646 Location: 77400-79659 bp Feature: domain Description: KOG1000 Location: 79929-80226 bp Feature: domain Description: KOG1000 Location: 7992 9-802 2 6 bp Feature: gene Location: 81005-81424 bp Feature: domain Description: COG4646 Location: 81170-81413 bp Feature: domain Description: COG4646 Location: 81170-81413 bp Feature: gene Location: 81694-83565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82015-82750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 015-82 750 bp Feature: domain Description: HNHc Note: nucleases Location: 83305-83446 bp Feature: domain Description: HNHc Note: nucleases Location: 83305-83446 bp Feature: gene Location: 84244-86583 bp Feature: gene Location: 86567-87676 bp Feature: domain Description: ParB_N_like Location: 86717-86963 bp Feature: domain Description: ParB_N_like Location: 86717-86963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TadB (COG4965), CpaF (COG4962), RVT-GII, HNHc (smart00507), SpoVG (pfam04026), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), ParB_N_like (cd16411)

Seq: QSHY01000016.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf16, whole genome shotgun sequence (155493 bp)
Overview 1 RT 1: 56222-61221 bp 2 RT 2: 94720-97824 bp Neighborhood of RT #1 [56222, 61247] DUF2871 RVT-Retrons RVT-Retrons PRK14806 PRK06545 Neighborhood of RT #2 [94720, 98453] RVT-GII GIIM MobC Relaxase Feature: gene Location: 56222-56905 bp Feature: gene Location: 56907-57350 bp Feature: domain Description: DUF2871 Location: 56943-57333 bp Feature: domain Description: DUF2871 Location: 56943 -573 3 3 bp Feature: gene Location: 57694-58293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57859-58273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57859-58273 bp Feature: gene Location: 58290-58703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58293-58413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58293 -58413 bp Feature: gene Location: 58849-60126 bp Feature: domain Description: PRK14806 Location: 58861-60103 bp Feature: domain Description: PRK14806 Location: 58861-60103 bp Feature: gene Location: 60150-61247 bp Feature: domain Description: PRK06545 Location: 60165-61221 bp Feature: domain Description: PRK06545 Location: 60165-61221 bp Feature: gene Location: 94720-94857 bp Feature: gene Location: 95022-95180 bp Feature: gene Location: 95212-96516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95413-96031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95413 -9603 1 bp Feature: domain Description: GIIM Note: maturase Location: 96085-96298 bp Feature: domain Description: GIIM Note: maturase Location: 96085-96298 bp Feature: gene Location: 96811-97140 bp Feature: domain Description: MobC Location: 96991-97108 bp Feature: domain Description: MobC Location: 96991-97108 bp Feature: gene Location: 97101-98453 bp Feature: domain Description: Relaxase Location: 97131-97824 bp Feature: domain Description: Relaxase Location: 9713 1-97824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2871 (pfam11070), RVT-Retrons, PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), PRK06545 (prephenate dehydrogenase; Validated), RVT-GII, GIIM (pfam08388), MobC (pfam05713), Relaxase (pfam03432)

Seq: QSHY01000019.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf19, whole genome shotgun sequence (146982 bp)
Overview 1 RT 1: 49507-53663 bp Neighborhood of RT #1 [49507, 53663] COG2405 RVT-GII GIIM Feature: gene Location: 49507-50004 bp Feature: domain Description: COG2405 Location: 49519-49990 bp Feature: domain Description: COG24 05 Location: 4 9519-4 9990 bp Feature: gene Location: 50294-50425 bp Feature: gene Location: 50640-52031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50955-51579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50955-51579 bp Feature: domain Description: GIIM Note: maturase Location: 51636-51852 bp Feature: domain Description: GIIM Note: maturase Location: 51636-51852 bp Feature: gene Location: 52444-53295 bp Feature: gene Location: 53325-53663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388)

Seq: QSHY01000007.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf7, whole genome shotgun sequence (227009 bp)
Overview 1 RT 1: 164081-166675 bp Neighborhood of RT #1 [164081, 166680] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 164081-164296 bp Feature: domain Description: Phage_holin_Dp1 Location: 164090-164276 bp Feature: domain Description: Phage_holin_Dp1 Location: 164090-164276 bp Feature: gene Location: 164283-164618 bp Feature: gene Location: 164644-165840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164839-165562 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164839-165 5 62 bp Feature: gene Location: 166046-166453 bp Feature: gene Location: 166537-166680 bp Feature: domain Description: Phage_XkdX Location: 166558-166675 bp Feature: domain Description: Phage_XkdX Location: 1665 5 8-166675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QSHY01000081.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf81, whole genome shotgun sequence (2526 bp)
Overview 1 RT 1: 1-2064 bp Neighborhood of RT #1 [1, 2408] RVT-GII Intron_maturas2 Feature: gene Location: 1-165 bp Feature: gene Location: 591-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-16 86 bp Feature: domain Description: Intron_maturas2 Location: 1758-2064 bp Feature: domain Description: Intron_maturas2 Location: 1758-206 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSHY01000082.1 Hungatella hathewayi strain AM35-8 AM35-8.Scaf82, whole genome shotgun sequence (2501 bp)
Overview 1 RT 1: 111-2355 bp Neighborhood of RT #1 [111, 2355] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 111-1925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 5-1197 bp Feature: domain Description: Intron_maturas2 Location: 1269-1695 bp Feature: domain Description: Intron_maturas2 Location: 1269-1695 bp Feature: domain Description: HNHc Note: nucleases Location: 1752-1896 bp Feature: domain Description: HNHc Note: nucleases Location: 17 52-1896 bp Feature: gene Location: 2161-2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)