myRT

myRT report for GCA_003467855.1_ASM346785v1

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Seq: QSHZ01000010.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf10, whole genome shotgun sequence (192382 bp)
Overview 1 RT 1: 141609-143957 bp Neighborhood of RT #1 [141609, 143957] NAT_SF YoaP RVT-Retrons Feature: gene Location: 141609-141767 bp Feature: gene Location: 141855-142514 bp Feature: domain Description: NAT_SF Location: 141978-142095 bp Feature: domain Description: NAT_SF Location: 1 41 978-1 42095 bp Feature: domain Description: YoaP Location: 142377-142503 bp Feature: domain Description: YoaP Location: 1 42377-1 42503 bp Feature: gene Location: 142526-143533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142691-143246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 42691 -1 43246 bp Feature: gene Location: 143291-143641 bp Feature: gene Location: 143754-143957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons

Seq: QSHZ01000101.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf101, whole genome shotgun sequence (2777 bp)
Overview 1 RT 1: 714-2479 bp Neighborhood of RT #1 [714, 2685] RVT-GII RVT-GII HNHc Feature: gene Location: 714-842 bp Feature: gene Location: 842-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1388 bp Feature: gene Location: 1441-1569 bp Feature: gene Location: 1606-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609-1786 bp Feature: domain Description: HNHc Note: nucleases Location: 2341-2479 bp Feature: domain Description: HNHc Note: nucleases Location: 2 341-2 479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QSHZ01000105.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf105, whole genome shotgun sequence (2507 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 173 9-2042 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-23 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSHZ01000132.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf132, whole genome shotgun sequence (758 bp)
Overview 1 RT 1: 73-589 bp Neighborhood of RT #1 [73, 756] RVT-GII GIIM Feature: gene Location: 73-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-307 bp Feature: domain Description: GIIM Note: maturase Location: 361-589 bp Feature: domain Description: GIIM Note: maturase Location: 361-589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSHZ01000136.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf136, whole genome shotgun sequence (701 bp)
Overview 1 RT 1: 3-696 bp Neighborhood of RT #1 [3, 698] RVT-GII Feature: gene Location: 3-698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201-696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201-696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSHZ01000016.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf16, whole genome shotgun sequence (135478 bp)
Overview 1 RT 1: 125076-134299 bp Neighborhood of RT #1 [125076, 134442] RVT-GII Intron_maturas2 HNHc VirD4 VirD4 HTH_XRE Maff2 RVT-GII HNHc PrgI Feature: gene Location: 125076-125564 bp Feature: gene Location: 125818-126084 bp Feature: gene Location: 126123-127940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126387-127206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126 387-127206 bp Feature: domain Description: Intron_maturas2 Location: 127278-127584 bp Feature: domain Description: Intron_maturas2 Location: 127278-127584 bp Feature: domain Description: HNHc Note: nucleases Location: 127761-127905 bp Feature: domain Description: HNHc Note: nucleases Location: 12776 1-127905 bp Feature: gene Location: 128055-128318 bp Feature: domain Description: VirD4 Location: 128064-128256 bp Feature: domain Description: VirD4 Location: 12806 4-128256 bp Feature: gene Location: 128390-129313 bp Feature: domain Description: VirD4 Location: 128441-129209 bp Feature: domain Description: VirD4 Location: 128441-129209 bp Feature: gene Location: 129652-130044 bp Feature: domain Description: HTH_XRE Location: 129685-129865 bp Feature: domain Description: HTH_XRE Location: 1296 85-12986 5 bp Feature: gene Location: 130128-130259 bp Feature: domain Description: Maff2 Location: 130131-130257 bp Feature: domain Description: Maff2 Location: 130131-130257 bp Feature: gene Location: 130964-132850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131297-132035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131297-132035 bp Feature: domain Description: HNHc Note: nucleases Location: 132572-132734 bp Feature: domain Description: HNHc Note: nucleases Location: 132572-132734 bp Feature: gene Location: 133124-133990 bp Feature: gene Location: 134008-134442 bp Feature: domain Description: PrgI Location: 134026-134299 bp Feature: domain Description: PrgI Location: 134026 -134299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), HTH_XRE (smart00530), Maff2 (pfam12750), PrgI (pfam12666)

Seq: QSHZ01000002.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf2, whole genome shotgun sequence (352935 bp)
Overview 1 RT 1: 50459-53690 bp Neighborhood of RT #1 [50459, 53704] RVT-DGRs Phage_XkdX Feature: gene Location: 50459-51340 bp Feature: gene Location: 51387-52022 bp Feature: gene Location: 52069-53271 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52306-53023 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52306-53023 bp Feature: gene Location: 53249-53551 bp Feature: gene Location: 53555-53704 bp Feature: domain Description: Phage_XkdX Location: 53576-53690 bp Feature: domain Description: Phage_XkdX Location: 5357 6-53690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QSHZ01000023.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf23, whole genome shotgun sequence (102125 bp)
Overview 1 RT 1: 61746-64411 bp Neighborhood of RT #1 [61746, 64428] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 61746-61889 bp Feature: domain Description: Phage_XkdX Location: 61767-61884 bp Feature: domain Description: Phage_XkdX Location: 61767-618 8 4 bp Feature: gene Location: 61886-62371 bp Feature: gene Location: 62583-63779 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62778-63495 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62778 -63495 bp Feature: gene Location: 63782-64120 bp Feature: gene Location: 64132-64428 bp Feature: domain Description: Phage_holin_5_2 Location: 64180-64411 bp Feature: domain Description: Phage_holin_5_2 Location: 6418 0-64411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: QSHZ01000008.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf8, whole genome shotgun sequence (201195 bp)
Overview 1 RT 1: 198028-200856 bp Neighborhood of RT #1 [198028, 201170] LytT ArsC RVT-UG2 Feature: gene Location: 198028-198768 bp Feature: domain Description: LytT Location: 198040-198664 bp Feature: domain Description: LytT Location: 19 8040-19 8664 bp Feature: gene Location: 199072-199428 bp Feature: domain Description: ArsC Location: 199090-199420 bp Feature: domain Description: ArsC Location: 19 9 09 0-19 9 420 bp Feature: gene Location: 200103-201170 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 200127-200856 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 200127-200856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), ArsC (pfam03960), RVT-UG2

Seq: QSHZ01000095.1 [Clostridium] bolteae strain AM35-14 AM35-14.Scaf95, whole genome shotgun sequence (4171 bp)
Overview 1 RT 1: 1-1942 bp Neighborhood of RT #1 [1, 1977] RVT-GII XerD INT_RitA_C_like Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-583 bp Feature: gene Location: 743-1420 bp Feature: domain Description: XerD Location: 1115-1385 bp Feature: domain Description: XerD Location: 1115-1385 bp Feature: gene Location: 1597-1977 bp Feature: domain Description: INT_RitA_C_like Location: 1603-1942 bp Feature: domain Description: INT_RitA_C_like Location: 1603-1942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, XerD (COG4974), INT_RitA_C_like (cd01188)