myRT

myRT report for GCA_003467935.1_ASM346793v1

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Seq: QSFW01000023.1 Prevotella copri strain AM42-23AC AM42-23AC.Scaf23, whole genome shotgun sequence (62080 bp)
Overview 1 RT 1: 47559-51895 bp Neighborhood of RT #1 [47559, 51895] RVT-DGRs Feature: gene Location: 47559-48992 bp Feature: gene Location: 49144-49410 bp Feature: gene Location: 49598-51169 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49808-50546 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49808-50546 bp Feature: gene Location: 51176-51577 bp Feature: gene Location: 51761-51895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSFW01000024.1 Prevotella copri strain AM42-23AC AM42-23AC.Scaf24, whole genome shotgun sequence (58868 bp)
Overview 1 RT 1: 37931-41393 bp Neighborhood of RT #1 [37931, 41393] DUF4145 RVT-Retrons Feature: gene Location: 37931-38164 bp Feature: gene Location: 38289-38921 bp Feature: domain Description: DUF4145 Location: 38550-38793 bp Feature: domain Description: DUF4145 Location: 38550-38793 bp Feature: gene Location: 38928-39974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39162-39699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39162 -39699 bp Feature: gene Location: 40174-40545 bp Feature: gene Location: 40548-41393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-Retrons

Seq: QSFW01000059.1 Prevotella copri strain AM42-23AC AM42-23AC.Scaf59, whole genome shotgun sequence (10338 bp)
Overview 1 RT 1: 2832-5963 bp Neighborhood of RT #1 [2832, 5968] Avd_like Fib_succ_major RVT-DGRs PRK00024 Feature: gene Location: 2832-3206 bp Feature: domain Description: Avd_like Location: 2859-3168 bp Feature: domain Description: Avd_like Location: 2859-3 168 bp Feature: gene Location: 3433-3642 bp Feature: domain Description: Fib_succ_major Location: 3442-3622 bp Feature: domain Description: Fib_succ_major Location: 3 442-3 622 bp Feature: gene Location: 3652-4911 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3862-4582 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 862-4582 bp Feature: gene Location: 5069-5218 bp Feature: gene Location: 5261-5968 bp Feature: domain Description: PRK00024 Location: 5324-5963 bp Feature: domain Description: PRK00024 Location: 53 24-5963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Fib_succ_major (TIGR02145), RVT-DGRs, PRK00024 (DNA repair protein RadC)

Seq: QSFW01000006.1 Prevotella copri strain AM42-23AC AM42-23AC.Scaf6, whole genome shotgun sequence (146332 bp)
Overview 1 RT 1: 135374-145635 bp Neighborhood of RT #1 [135374, 145688] DUF1896 COG4646 SF2_C RVT_N RVT-GII YkfC NGN_SP_UpxY KOW_NusG Feature: gene Location: 135374-135922 bp Feature: domain Description: DUF1896 Location: 135494-135917 bp Feature: domain Description: DUF1896 Location: 1354 94 -135917 bp Feature: gene Location: 135909-140681 bp Feature: domain Description: COG4646 Location: 138300-140301 bp Feature: domain Description: COG4 64 6 Location: 138300-14 0301 bp Feature: domain Description: SF2_C Location: 140445-140622 bp Feature: domain Description: SF2_C Location: 14 04 4 5-14 0622 bp Feature: gene Location: 141287-143023 bp Feature: RT Description: RVT_N Location: 141410-141653 bp Feature: RT Description: RVT_N Location: 14 14 10-14 1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141698-142346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 1698-14 234 6 bp Feature: domain Description: YkfC Location: 142556-142646 bp Feature: domain Description: YkfC Location: 14 2556-14 264 6 bp Feature: gene Location: 142977-144200 bp Feature: gene Location: 144960-145688 bp Feature: domain Description: NGN_SP_UpxY Location: 145161-145470 bp Feature: domain Description: NGN_SP_UpxY Location: 14 5161-14 54 70 bp Feature: domain Description: KOW_NusG Location: 145527-145635 bp Feature: domain Description: KOW_NusG Location: 14 5527-14 5635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), COG4646 (Adenine-specific DNA methylase, N12 class ), SF2_C (cd18785), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: QSFW01000079.1 Prevotella copri strain AM42-23AC AM42-23AC.Scaf79, whole genome shotgun sequence (4187 bp)
Overview 1 RT 1: 2240-3938 bp Neighborhood of RT #1 [2240, 4033] RVT-GII GIIM Feature: gene Location: 2240-2458 bp Feature: gene Location: 2593-2721 bp Feature: gene Location: 2771-4033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2975-3632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2975 -3632 bp Feature: domain Description: GIIM Note: maturase Location: 3713-3938 bp Feature: domain Description: GIIM Note: maturase Location: 3713-3938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)