myRT

myRT report for GCA_003468145.1_ASM346814v1

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Seq: QSGL01000015.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf15, whole genome shotgun sequence (126246 bp)
Overview 1 RT 1: 989-3929 bp Neighborhood of RT #1 [989, 3929] RVT-GII GIIM Feature: gene Location: 989-1240 bp Feature: gene Location: 1252-1416 bp Feature: gene Location: 1649-2944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1844-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 844-2459 bp Feature: domain Description: GIIM Note: maturase Location: 2531-2744 bp Feature: domain Description: GIIM Note: maturase Location: 2531 -2744 bp Feature: gene Location: 3285-3488 bp Feature: gene Location: 3522-3929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSGL01000003.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf3, whole genome shotgun sequence (370215 bp)
Overview 1 RT 1: 341600-347142 bp Neighborhood of RT #1 [341600, 347282] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 341600-341842 bp Feature: gene Location: 343351-343641 bp Feature: domain Description: Cas2_I_II_III Location: 343378-343588 bp Feature: domain Description: Cas2 _I_II_III Location: 343378-343588 bp Feature: gene Location: 343635-345905 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 343842-344448 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 343842 -344448 bp Feature: domain Description: Cas1_I-II-III Location: 344907-345864 bp Feature: domain Description: Cas1_I-II-III Location: 344907-345864 bp Feature: gene Location: 345925-346869 bp Feature: domain Description: Cmr6_III-B Location: 346081-346858 bp Feature: domain Description: Cmr6_III-B Location: 346081-346858 bp Feature: gene Location: 346872-347282 bp Feature: domain Description: Cas_Cmr5 Location: 346920-347142 bp Feature: domain Description: Cas_Cmr5 Location: 34692 0-347142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: QSGL01000004.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf4, whole genome shotgun sequence (325907 bp)
Overview 1 RT 1: 211580-220544 bp Neighborhood of RT #1 [211580, 220546] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 211580-212494 bp Feature: domain Description: RNase_Z Location: 211595-212486 bp Feature: domain Description: RNase_Z Location: 211595-212486 bp Feature: gene Location: 212644-214437 bp Feature: domain Description: rpsA Location: 212722-214330 bp Feature: domain Description: rpsA Location: 212722-2143 3 0 bp Feature: gene Location: 214579-215691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214894-215443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214894-215443 bp Feature: gene Location: 215898-218117 bp Feature: gene Location: 218357-220546 bp Feature: domain Description: GlnA3 Location: 218432-220544 bp Feature: domain Description: GlnA3 Location: 21843 2-220544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: QSGL01000054.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf54, whole genome shotgun sequence (2457 bp)
Overview 1 RT 1: 670-2455 bp Neighborhood of RT #1 [670, 2455] RVT_N RVT-GII GIIM Feature: gene Location: 670-2322 bp Feature: domain Description: RVT_N Location: 724-967 bp Feature: domain Description: RVT_N Location: 724 -967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1660 bp Feature: domain Description: GIIM Note: maturase Location: 1714-1945 bp Feature: domain Description: GIIM Note: maturase Location: 1714 -194 5 bp Feature: gene Location: 2327-2455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)