myRT

myRT report for GCA_003468155.1_ASM346815v1

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Seq: QSGM01000032.1 Bacteroides ovatus strain AM40-4 AM40-4.Scaf32, whole genome shotgun sequence (77155 bp)
Overview 1 RT 1: 362-12167 bp Neighborhood of RT #1 [362, 12283] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 362-715 bp Feature: domain Description: PDDEXK_2 Location: 401-590 bp Feature: domain Description: PDDEXK_2 Location: 401 -590 bp Feature: gene Location: 882-3089 bp Feature: gene Location: 3295-4425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3616-4159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361 6-41 59 bp Feature: gene Location: 4427-10384 bp Feature: domain Description: DUF4011 Location: 5657-6170 bp Feature: domain Description: DUF401 1 Location: 5657-61 70 bp Feature: domain Description: DEXXQc_SF1 Location: 6509-7475 bp Feature: domain Description: DEXXQc_SF1 Location: 6509-7475 bp Feature: domain Description: DEXXQc_SF1 Location: 7937-8696 bp Feature: domain Description: DEXXQc_SF1 Location: 7937-8696 bp Feature: domain Description: TIGR00376 Location: 8828-9215 bp Feature: domain Description: TIGR00376 Location: 8828-921 5 bp Feature: domain Description: MTES_1575 Location: 9368-9653 bp Feature: domain Description: MTES_1 575 Location: 9368-9653 bp Feature: domain Description: DUF3320 Location: 9893-10034 bp Feature: domain Description: DUF3320 Location: 9893-1 0034 bp Feature: gene Location: 10481-12283 bp Feature: domain Description: rpsA Location: 10550-12167 bp Feature: domain Description: rpsA Location: 1 0550-1 21 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: QSGM01000073.1 Bacteroides ovatus strain AM40-4 AM40-4.Scaf73, whole genome shotgun sequence (5215 bp)
Overview 1 RT 1: 1-5212 bp Neighborhood of RT #1 [1, 5212] COG4646 matK RVT-GII Intron_maturas2 COG4646 Feature: gene Location: 1-789 bp Feature: domain Description: COG4646 Location: 16-778 bp Feature: domain Description: COG4646 Location: 16-778 bp Feature: gene Location: 967-1236 bp Feature: gene Location: 1342-3144 bp Feature: domain Description: matK Location: 1411-1498 bp Feature: domain Description: matK Location: 1411-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2 42 8 bp Feature: domain Description: Intron_maturas2 Location: 2578-2812 bp Feature: domain Description: Intron_maturas2 Location: 2 578-2 812 bp Feature: gene Location: 3131-4744 bp Feature: domain Description: COG4646 Location: 3245-4169 bp Feature: domain Description: COG4646 Location: 32 45-4169 bp Feature: gene Location: 4826-5212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QSGM01000074.1 Bacteroides ovatus strain AM40-4 AM40-4.Scaf74, whole genome shotgun sequence (5104 bp)
Overview 1 RT 1: 416-4540 bp Neighborhood of RT #1 [416, 4569] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 416-574 bp Feature: domain Description: DUF4141 Location: 431-572 bp Feature: domain Description: DUF4141 Location: 43 1-572 bp Feature: gene Location: 683-844 bp Feature: gene Location: 1164-2999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458-2280 bp Feature: domain Description: Intron_maturas2 Location: 2439-2808 bp Feature: domain Description: Intron_maturas2 Location: 243 9-2808 bp Feature: domain Description: HNHc Note: nucleases Location: 2832-2973 bp Feature: domain Description: HNHc Note: nucleases Location: 283 2-2973 bp Feature: gene Location: 2992-3528 bp Feature: gene Location: 3556-4569 bp Feature: domain Description: Bac_Flav_CT_J Location: 3577-4540 bp Feature: domain Description: Bac_Flav_CT_J Location: 3 577-4540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605)

Seq: QSGM01000096.1 Bacteroides ovatus strain AM40-4 AM40-4.Scaf96, whole genome shotgun sequence (2658 bp)
Overview 1 RT 1: 3-1625 bp Neighborhood of RT #1 [3, 1999] Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 3-344 bp Feature: domain Description: Bac_Flav_CT_G Location: 120-345 bp Feature: domain Description: Bac_Flav_CT_G Location: 120-34 5 bp Feature: gene Location: 353-1999 bp Feature: RT Description: RVT_N Location: 407-650 bp Feature: RT Description: RVT_N Location: 4 07-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-134 0 bp Feature: domain Description: GIIM Note: maturase Location: 1394-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1394 -1625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)