myRT

myRT report for GCA_003468225.1_ASM346822v1

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Seq: QSGW01000108.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf108, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 409-1351 bp Neighborhood of RT #1 [409, 1491] RVT-GII Feature: gene Location: 409-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1 351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSGW01000002.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf2, whole genome shotgun sequence (285418 bp)
Overview 1 RT 1: 82700-88786 bp Neighborhood of RT #1 [82700, 88786] VirB4_CagE TraC-F-type RVT-GII HNHc Feature: gene Location: 82700-84970 bp Feature: domain Description: VirB4_CagE Location: 82907-83081 bp Feature: domain Description: VirB4_CagE Location: 82 907-83081 bp Feature: domain Description: TraC-F-type Location: 83585-84959 bp Feature: domain Description: TraC-F-type Location: 83585-84959 bp Feature: gene Location: 85255-85503 bp Feature: gene Location: 85702-87582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86035-86752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86035-86752 bp Feature: domain Description: HNHc Note: nucleases Location: 87334-87472 bp Feature: domain Description: HNHc Note: nucleases Location: 87334-87472 bp Feature: gene Location: 87764-87985 bp Feature: gene Location: 88001-88786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: QSGW01000003.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf3, whole genome shotgun sequence (208050 bp)
Overview 1 RT 1: 142007-145530 bp Neighborhood of RT #1 [142007, 145550] DUF2304 RVT-GII GIIM rmlC Feature: gene Location: 142007-142405 bp Feature: domain Description: DUF2304 Location: 142025-142334 bp Feature: domain Description: DUF23 04 Location: 142025-1423 3 4 bp Feature: gene Location: 142635-142991 bp Feature: gene Location: 143111-144409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143369-144056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 3 69-144056 bp Feature: domain Description: GIIM Note: maturase Location: 144134-144341 bp Feature: domain Description: GIIM Note: maturase Location: 14413 4-1443 41 bp Feature: gene Location: 144535-144669 bp Feature: gene Location: 144990-145550 bp Feature: domain Description: rmlC Location: 145011-145530 bp Feature: domain Description: rmlC Location: 145011-14553 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2304 (pfam10066), RVT-GII, GIIM (pfam08388), rmlC (TIGR01221)

Seq: QSGW01000092.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf92, whole genome shotgun sequence (5457 bp)
Overview 1 RT 1: 184-5286 bp Neighborhood of RT #1 [184, 5288] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 184-1368 bp Feature: domain Description: MviM Location: 205-502 bp Feature: domain Description: MviM Location: 205-502 bp Feature: domain Description: MviM Location: 577-1360 bp Feature: domain Description: MviM Location: 577-1360 bp Feature: gene Location: 1690-2634 bp Feature: domain Description: LysR Location: 1729-2587 bp Feature: domain Description: LysR Location: 1729-2587 bp Feature: gene Location: 2682-3668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2847-3402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 284 7-34 02 bp Feature: gene Location: 3696-3908 bp Feature: gene Location: 3966-5288 bp Feature: domain Description: YuiF Location: 3987-5286 bp Feature: domain Description: YuiF Location: 3987-5286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), MviM (COG0673), RVT-Retrons, YuiF (COG2056)