myRT

myRT report for GCA_003468235.1_ASM346823v1

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Seq: QSGX01000015.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf15, whole genome shotgun sequence (152275 bp)
Overview 1 RT 1: 146136-151738 bp Neighborhood of RT #1 [146136, 151917] YqxK UvrD UvrD NagC RVT-GII GIIM Feature: gene Location: 146136-149375 bp Feature: domain Description: YqxK Location: 146139-147384 bp Feature: domain Description: YqxK Location: 1 461 39-1 47384 bp Feature: domain Description: UvrD Location: 147582-148839 bp Feature: domain Description: UvrD Location: 1 47582-1 48839 bp Feature: domain Description: UvrD Location: 148926-149304 bp Feature: domain Description: UvrD Location: 1 48926-1 49304 bp Feature: gene Location: 149496-150722 bp Feature: domain Description: NagC Location: 149793-150687 bp Feature: domain Description: NagC Location: 1 49793-1 50687 bp Feature: gene Location: 150859-151917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150862-151465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50862-1 51 465 bp Feature: domain Description: GIIM Note: maturase Location: 151522-151738 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 522-1 51 738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqxK (COG1379), UvrD (COG0210), NagC (COG1940), RVT-GII, GIIM (pfam08388)

Seq: QSGX01000020.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf20, whole genome shotgun sequence (119459 bp)
Overview 1 RT 1: 1295-5911 bp 2 RT 2: 24504-33893 bp Neighborhood of RT #1 [1295, 5911] pilus_cpaB Peptidase_A24 RVT-GII Intron_maturas2 Neighborhood of RT #2 [24504, 33893] KAP_NTPase RVT-Retrons Trypsin_2 SIR2 Piwi_piwi-like_ProArk Feature: gene Location: 1295-2092 bp Feature: domain Description: pilus_cpaB Location: 1391-2045 bp Feature: domain Description: pilus_cpaB Location: 1391-2 045 bp Feature: gene Location: 2282-2689 bp Feature: domain Description: Peptidase_A24 Location: 2312-2594 bp Feature: domain Description: Peptidase_A2 4 Location: 2 312 -2 594 bp Feature: gene Location: 3041-4783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362-4196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362 -4196 bp Feature: domain Description: Intron_maturas2 Location: 4271-4598 bp Feature: domain Description: Intron_maturas2 Location: 42 71-4598 bp Feature: gene Location: 5200-5448 bp Feature: gene Location: 5678-5911 bp Feature: gene Location: 24504-26519 bp Feature: domain Description: KAP_NTPase Location: 24672-25815 bp Feature: domain Description: KAP_NTPase Location: 2 4672 -2 5815 bp Feature: gene Location: 26735-27094 bp Feature: gene Location: 27359-29023 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27509-28100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7509-2 8100 bp Feature: domain Description: Trypsin_2 Location: 28517-28928 bp Feature: domain Description: Trypsin_2 Location: 2 8517-2 892 8 bp Feature: gene Location: 29230-32370 bp Feature: domain Description: SIR2 Location: 29299-29797 bp Feature: domain Description: SIR2 Location: 2 92 99-2 9797 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 31060-32317 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 31060-32 317 bp Feature: gene Location: 32487-33893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pilus_cpaB (TIGR03177), Peptidase_A24 (pfam01478), RVT-GII, Intron_maturas2 (pfam01348), KAP_NTPase (pfam07693), RVT-Retrons, Trypsin_2 (pfam13365), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659)

Seq: QSGX01000003.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf3, whole genome shotgun sequence (276170 bp)
Overview 1 RT 1: 102-4460 bp Neighborhood of RT #1 [102, 4489] RVT-Retrons GDE_N GDE_C PurR Feature: gene Location: 102-1115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 267-822 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 267-822 bp Feature: gene Location: 1495-3474 bp Feature: domain Description: GDE_N Location: 1558-2188 bp Feature: domain Description: GDE_N Location: 1558-2188 bp Feature: domain Description: GDE_C Location: 2347-3439 bp Feature: domain Description: GDE_C Location: 23 47-3 43 9 bp Feature: gene Location: 3500-4489 bp Feature: domain Description: PurR Location: 3509-4460 bp Feature: domain Description: PurR Location: 3 509-4460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, GDE_N (pfam12439), GDE_C (pfam06202), PurR (COG1609)

Seq: QSGX01000038.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf38, whole genome shotgun sequence (58144 bp)
Overview 1 RT 1: 12873-17984 bp Neighborhood of RT #1 [12873, 17984] MdlB VanZ RVT-GII excise Feature: gene Location: 12873-14687 bp Feature: domain Description: MdlB Location: 12888-14664 bp Feature: domain Description: MdlB Location: 12888-14 664 bp Feature: gene Location: 14775-15287 bp Feature: domain Description: VanZ Location: 14829-15177 bp Feature: domain Description: VanZ Location: 14 829-15177 bp Feature: gene Location: 16194-16616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16494-16542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 94 -1654 2 bp Feature: gene Location: 16624-17391 bp Feature: domain Description: excise Location: 17230-17311 bp Feature: domain Description: excise Location: 17230-17311 bp Feature: gene Location: 17391-17984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), VanZ (pfam04892), RVT-GII, excise (TIGR01764)

Seq: QSGX01000039.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf39, whole genome shotgun sequence (57760 bp)
Overview 1 RT 1: 32365-37056 bp 2 RT 2: 39241-43872 bp Neighborhood of RT #1 [32365, 37115] RVT-GII Intron_maturas2 HNHc Spr Neighborhood of RT #2 [39241, 43895] VirB4 RVT_N RVT-GII GIIM HNH VirB4_CagE Feature: gene Location: 32365-33105 bp Feature: gene Location: 33197-33475 bp Feature: gene Location: 33750-35537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34017-34827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34017-34827 bp Feature: domain Description: Intron_maturas2 Location: 34902-35322 bp Feature: domain Description: Intron_maturas2 Location: 34902-35 322 bp Feature: domain Description: HNHc Note: nucleases Location: 35364-35517 bp Feature: domain Description: HNHc Note: nucleases Location: 35 364-35 5 17 bp Feature: gene Location: 35743-35988 bp Feature: gene Location: 36129-37115 bp Feature: domain Description: Spr Location: 36690-37056 bp Feature: domain Description: Spr Location: 36690-3705 6 bp Feature: gene Location: 39241-39720 bp Feature: gene Location: 39756-40877 bp Feature: domain Description: VirB4 Location: 40248-40773 bp Feature: domain Description: VirB4 Location: 40248-40773 bp Feature: gene Location: 40825-42498 bp Feature: RT Description: RVT_N Location: 40897-41137 bp Feature: RT Description: RVT_N Location: 40897-41137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41185-41845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41185 -41845 bp Feature: domain Description: GIIM Note: maturase Location: 41896-42133 bp Feature: domain Description: GIIM Note: maturase Location: 41896-42133 bp Feature: domain Description: HNH Note: nucleases Location: 42346-42463 bp Feature: domain Description: HNH Note: nucleases Location: 42346-42463 bp Feature: gene Location: 42717-42899 bp Feature: gene Location: 43029-43895 bp Feature: domain Description: VirB4_CagE Location: 43146-43872 bp Feature: domain Description: VirB4_CagE Location: 43146-43872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), VirB4 (COG3451), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), VirB4_CagE (TIGR00929)

Seq: QSGX01000005.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf5, whole genome shotgun sequence (238901 bp)
Overview 1 RT 1: 188702-198680 bp Neighborhood of RT #1 [188702, 199081] SpoVG SpoVG KOG1000 PTZ00461 RVT-GII Intron_maturas2 HNHc YtxK COG4646 Feature: gene Location: 188702-189325 bp Feature: domain Description: SpoVG Location: 188720-188975 bp Feature: domain Description: SpoVG Location: 188720-188975 bp Feature: domain Description: SpoVG Location: 189059-189284 bp Feature: domain Description: SpoVG Location: 189059-189284 bp Feature: gene Location: 189345-190289 bp Feature: domain Description: KOG1000 Location: 189393-189570 bp Feature: domain Description: KOG1000 Location: 189393-189570 bp Feature: domain Description: PTZ00461 Location: 189846-190104 bp Feature: domain Description: PTZ0046 1 Location: 189846 -190104 bp Feature: gene Location: 190349-192163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190613-191435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906 13-191435 bp Feature: domain Description: Intron_maturas2 Location: 191507-191933 bp Feature: domain Description: Intron_maturas2 Location: 191507-191933 bp Feature: domain Description: HNHc Note: nucleases Location: 191990-192134 bp Feature: domain Description: HNHc Note: nucleases Location: 191990-192134 bp Feature: gene Location: 192399-192593 bp Feature: gene Location: 192716-199081 bp Feature: domain Description: YtxK Location: 195317-195995 bp Feature: domain Description: YtxK Location: 195317-195995 bp Feature: domain Description: COG4646 Location: 196070-198680 bp Feature: domain Description: COG46 46 Location: 196 070-1986 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PTZ00461 (isovaleryl-CoA dehydrogenase; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QSGX01000051.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf51, whole genome shotgun sequence (37677 bp)
Overview 1 RT 1: 18820-22512 bp Neighborhood of RT #1 [18820, 22512] RVT-GII HNHc Feature: gene Location: 18820-19050 bp Feature: gene Location: 19325-19576 bp Feature: gene Location: 19602-21473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19917-20643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19917 -20643 bp Feature: domain Description: HNHc Note: nucleases Location: 21195-21363 bp Feature: domain Description: HNHc Note: nucleases Location: 21195-21363 bp Feature: gene Location: 22017-22166 bp Feature: gene Location: 22228-22512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QSGX01000053.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf53, whole genome shotgun sequence (35594 bp)
Overview 1 RT 1: 3368-7500 bp Neighborhood of RT #1 [3368, 7541] SpoVG SpoVG RVT-GII Intron_maturas2 YodL Feature: gene Location: 3368-3703 bp Feature: domain Description: SpoVG Location: 3371-3623 bp Feature: domain Description: SpoVG Location: 3371-3623 bp Feature: gene Location: 3811-4488 bp Feature: domain Description: SpoVG Location: 4126-4366 bp Feature: domain Description: SpoVG Location: 4126-4366 bp Feature: gene Location: 4788-6293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5130-5751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5130-5751 bp Feature: domain Description: Intron_maturas2 Location: 5898-6147 bp Feature: domain Description: Intron_maturas2 Location: 58 98 -6147 bp Feature: gene Location: 6453-6698 bp Feature: gene Location: 6984-7541 bp Feature: domain Description: YodL Location: 7209-7500 bp Feature: domain Description: YodL Location: 7209-7500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), YodL (pfam14191)

Seq: QSGX01000092.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf92, whole genome shotgun sequence (2727 bp)
Overview 1 RT 1: 699-2451 bp Neighborhood of RT #1 [699, 2570] RVT-GII HNHc Feature: gene Location: 699-2570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1755 bp Feature: domain Description: HNHc Note: nucleases Location: 2310-2451 bp Feature: domain Description: HNHc Note: nucleases Location: 2310-2451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QSGX01000095.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf95, whole genome shotgun sequence (2637 bp)
Overview 1 RT 1: 96-2635 bp Neighborhood of RT #1 [96, 2635] RVT-GII HNHc Feature: gene Location: 96-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: domain Description: HNHc Note: nucleases Location: 1659-1800 bp Feature: domain Description: HNHc Note: nucleases Location: 1659-1800 bp Feature: gene Location: 2507-2635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)