myRT

myRT report for GCA_003468465.1_ASM346846v1

Download annotations/find similar RTs

Seq: QSIF01000001.1 Bacteroides uniformis strain AM34-25 AM34-25.Scaf1, whole genome shotgun sequence (350824 bp)
Overview 1 RT 1: 214584-222112 bp Neighborhood of RT #1 [214584, 222112] N6_Mtase COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 214584-214787 bp Feature: gene Location: 214841-218878 bp Feature: domain Description: N6_Mtase Location: 215333-215747 bp Feature: domain Description: N6_Mtase Location: 21 5333-21 5747 bp Feature: domain Description: COG4646 Location: 216530-218273 bp Feature: domain Description: COG4646 Location: 21 6530-21 8273 bp Feature: gene Location: 219536-221209 bp Feature: RT Description: RVT_N Location: 219590-219833 bp Feature: RT Description: RVT_N Location: 21 9590-21 9833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219878-220526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9878-220526 bp Feature: domain Description: GIIM Note: maturase Location: 220580-220811 bp Feature: domain Description: GIIM Note: maturase Location: 220580-22081 1 bp Feature: gene Location: 221188-221652 bp Feature: gene Location: 221819-222112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSIF01000015.1 Bacteroides uniformis strain AM34-25 AM34-25.Scaf15, whole genome shotgun sequence (95486 bp)
Overview 1 RT 1: 15884-22369 bp Neighborhood of RT #1 [15884, 22369] Relaxase Relaxase T4SS-DNA_transf RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 15884-17146 bp Feature: domain Description: Relaxase Location: 16064-16538 bp Feature: domain Description: Relaxase Location: 16064-16538 bp Feature: domain Description: Relaxase Location: 16694-16904 bp Feature: domain Description: Relaxase Location: 16694-16904 bp Feature: gene Location: 17493-18131 bp Feature: domain Description: T4SS-DNA_transf Location: 17682-18048 bp Feature: domain Description: T4SS-DNA_transf Location: 17682 -18048 bp Feature: gene Location: 18768-20420 bp Feature: RT Description: RVT_N Location: 18822-19065 bp Feature: RT Description: RVT_N Location: 1882 2 -19065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19110-19758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19110-19758 bp Feature: domain Description: GIIM Note: maturase Location: 19812-20043 bp Feature: domain Description: GIIM Note: maturase Location: 19812 -2 0043 bp Feature: gene Location: 20425-21660 bp Feature: domain Description: TraG-D_C Location: 21007-21340 bp Feature: domain Description: TraG-D_C Location: 2 1007-2 1340 bp Feature: gene Location: 21755-22369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), T4SS-DNA_transf (pfam02534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSIF01000046.1 Bacteroides uniformis strain AM34-25 AM34-25.Scaf46, whole genome shotgun sequence (32731 bp)
Overview 1 RT 1: 18615-23977 bp Neighborhood of RT #1 [18615, 23991] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 18615-19247 bp Feature: domain Description: DUF4141 Location: 18639-18786 bp Feature: domain Description: DUF4141 Location: 1863 9-18786 bp Feature: gene Location: 19268-19726 bp Feature: domain Description: Bac_Flav_CT_G Location: 19286-19712 bp Feature: domain Description: Bac_Flav_CT_G Location: 19286-19712 bp Feature: gene Location: 19804-21615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20068-20890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20068-20890 bp Feature: domain Description: Intron_maturas2 Location: 20965-21280 bp Feature: domain Description: Intron_maturas2 Location: 20965-21280 bp Feature: domain Description: HNHc Note: nucleases Location: 21436-21586 bp Feature: domain Description: HNHc Note: nucleases Location: 2143 6-21586 bp Feature: gene Location: 21961-22134 bp Feature: gene Location: 22162-23991 bp Feature: domain Description: Bac_Flav_CT_G Location: 22165-23977 bp Feature: domain Description: Bac_Flav_CT_G Location: 22165-23 977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSIF01000065.1 Bacteroides uniformis strain AM34-25 AM34-25.Scaf65, whole genome shotgun sequence (10870 bp)
Overview 1 RT 1: 403-4232 bp Neighborhood of RT #1 [403, 4246] DUF3872 Toprim_2 RVT-GII Intron_maturas2 zf-CHC2 Feature: gene Location: 403-906 bp Feature: domain Description: DUF3872 Location: 454-841 bp Feature: domain Description: DUF3872 Location: 4 54 -84 1 bp Feature: gene Location: 903-1736 bp Feature: domain Description: Toprim_2 Location: 1455-1713 bp Feature: domain Description: Toprim_2 Location: 14 55-1713 bp Feature: gene Location: 1708-3516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2794 bp Feature: domain Description: Intron_maturas2 Location: 2863-3172 bp Feature: domain Description: Intron_maturas2 Location: 2863-3172 bp Feature: gene Location: 3805-3948 bp Feature: gene Location: 4064-4246 bp Feature: domain Description: zf-CHC2 Location: 4091-4232 bp Feature: domain Description: zf-CHC2 Location: 4 091-4 232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF3872 (pfam12988), Toprim_2 (pfam13155)

Seq: QSIF01000097.1 Bacteroides uniformis strain AM34-25 AM34-25.Scaf97, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 581-2366 bp Neighborhood of RT #1 [581, 2404] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 581-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845 -1667 bp Feature: domain Description: Intron_maturas2 Location: 1841-2084 bp Feature: domain Description: Intron_maturas2 Location: 1841-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2195-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2195 -2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)