myRT

myRT report for GCA_003468635.1_ASM346863v1

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Seq: QSIR01000001.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf1, whole genome shotgun sequence (333640 bp)
Overview 1 RT 1: 258376-263726 bp Neighborhood of RT #1 [258376, 263726] Tail_P2_I pfam12571 RVT-DGRs bZIP_XBP1 Feature: gene Location: 258376-259191 bp Feature: domain Description: Tail_P2_I Location: 258457-258835 bp Feature: domain Description: Tail_P2_I Location: 258457-258835 bp Feature: gene Location: 259204-261081 bp Feature: domain Description: pfam12571 Location: 259231-259636 bp Feature: domain Description: pfam1 2571 Location: 259231 -259636 bp Feature: gene Location: 261542-262687 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 261791-262430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 261 791 -262430 bp Feature: gene Location: 262647-263045 bp Feature: domain Description: bZIP_XBP1 Location: 262908-262995 bp Feature: domain Description: bZIP_XBP1 Location: 262908-262995 bp Feature: gene Location: 263340-263726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tail_P2_I (pfam09684), pfam12571 (DUF3751;Phage tail-collar fibre protein), RVT-DGRs, bZIP_XBP1 (cd14691)

Seq: QSIR01000010.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf10, whole genome shotgun sequence (107195 bp)
Overview 1 RT 1: 33781-37055 bp Neighborhood of RT #1 [33781, 37594] Phytochelatin_C RVT-DGRs Avd_like pfam03781 Feature: gene Location: 33781-34161 bp Feature: gene Location: 34174-34530 bp Feature: domain Description: Phytochelatin_C Location: 34189-34369 bp Feature: domain Description: Phytochelatin_C Location: 34189-34369 bp Feature: gene Location: 34509-35873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34941-35607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34941-35607 bp Feature: gene Location: 36081-36425 bp Feature: domain Description: Avd_like Location: 36105-36417 bp Feature: domain Description: Avd_like Location: 36105-36417 bp Feature: gene Location: 36497-37594 bp Feature: domain Description: pfam03781 Location: 36734-37055 bp Feature: domain Description: pfam03781 Location: 36734-37055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phytochelatin_C (pfam09328), RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: QSIR01000012.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf12, whole genome shotgun sequence (104104 bp)
Overview 1 RT 1: 15133-22910 bp 2 RT 2: 32994-35819 bp Neighborhood of RT #1 [15133, 23125] ImmA LPD18 LPD16 LPD16 Polbeta RVT_N RVT-GII YkfC SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #2 [32994, 35819] TnpV RVT-GII Feature: gene Location: 15133-17811 bp Feature: domain Description: ImmA Location: 15655-15862 bp Feature: domain Description: ImmA Location: 15655-15862 bp Feature: domain Description: LPD18 Location: 16084-16333 bp Feature: domain Description: LPD18 Location: 16084-163 3 3 bp Feature: domain Description: LPD16 Location: 16381-16624 bp Feature: domain Description: LPD16 Location: 163 81-16624 bp Feature: domain Description: LPD16 Location: 16678-16906 bp Feature: domain Description: LPD16 Location: 16678-16906 bp Feature: domain Description: Polbeta Location: 17077-17305 bp Feature: domain Description: Polbeta Location: 17077-173 05 bp Feature: gene Location: 17852-18775 bp Feature: gene Location: 18896-20566 bp Feature: RT Description: RVT_N Location: 18941-19184 bp Feature: RT Description: RVT_N Location: 18941-19184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19229-19877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19229-19877 bp Feature: domain Description: YkfC Location: 19985-20180 bp Feature: domain Description: YkfC Location: 19985-20180 bp Feature: gene Location: 20642-20788 bp Feature: gene Location: 21269-23125 bp Feature: domain Description: SR_TndX_transposase Location: 21311-21725 bp Feature: domain Description: SR_TndX_transposase Location: 213 11-21725 bp Feature: domain Description: Recombinase Location: 21830-22205 bp Feature: domain Description: Recombinase Location: 2183 0-22205 bp Feature: domain Description: Zn_ribbon_recom Location: 22244-22436 bp Feature: domain Description: Zn_ribbon_recom Location: 22244-2243 6 bp Feature: domain Description: DUF4368 Location: 22712-22910 bp Feature: domain Description: DUF43 68 Location: 22712-22910 bp Feature: gene Location: 32994-33368 bp Feature: domain Description: TnpV Location: 33030-33360 bp Feature: domain Description: TnpV Location: 3 3 03 0-3 3 3 60 bp Feature: gene Location: 33402-33587 bp Feature: gene Location: 33597-35273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33678-34404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 678-3 4404 bp Feature: gene Location: 35288-35509 bp Feature: gene Location: 35673-35819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ImmA (COG2856), LPD18 (pfam18832), LPD16 (pfam18830), Polbeta (pfam18765), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
DUF4368 (pfam14287), TnpV (pfam14198)

Seq: QSIR01000023.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf23, whole genome shotgun sequence (55935 bp)
Overview 1 RT 1: 41853-49136 bp Neighborhood of RT #1 [41853, 49162] PRK10572 DUF4300 RVT-GII GIIM ebgA MelB Feature: gene Location: 41853-42704 bp Feature: domain Description: PRK10572 Location: 41979-42696 bp Feature: domain Description: PRK10572 Location: 4 1979-4 2696 bp Feature: gene Location: 42866-43711 bp Feature: domain Description: DUF4300 Location: 42962-43706 bp Feature: domain Description: DUF4 300 Location: 4 2962-4 3706 bp Feature: gene Location: 43900-44490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43906-44005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3906-4 4 005 bp Feature: domain Description: GIIM Note: maturase Location: 44059-44275 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 059-4 4 275 bp Feature: gene Location: 44711-47776 bp Feature: domain Description: ebgA Location: 44729-47762 bp Feature: domain Description: ebgA Location: 4 4 729-4 7762 bp Feature: gene Location: 47783-49162 bp Feature: domain Description: MelB Location: 47792-49136 bp Feature: domain Description: MelB Location: 4 7792-4 9136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10572 (arabinose operon transcriptional regulator AraC), DUF4300 (pfam14133), RVT-GII, GIIM (pfam08388), ebgA (PRK10340), MelB (COG2211)

Seq: QSIR01000028.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf28, whole genome shotgun sequence (41823 bp)
Overview 1 RT 1: 11281-16226 bp Neighborhood of RT #1 [11281, 16651] RVT-DGRs DUF3751 DUF2313 Feature: gene Location: 11281-11595 bp Feature: gene Location: 11650-11826 bp Feature: gene Location: 12198-13448 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12402-13161 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12402-13161 bp Feature: gene Location: 13954-15759 bp Feature: domain Description: DUF3751 Location: 13975-14407 bp Feature: domain Description: DUF375 1 Location: 13975 -14407 bp Feature: gene Location: 15779-16651 bp Feature: domain Description: DUF2313 Location: 15800-16226 bp Feature: domain Description: DUF2313 Location: 15 800-16226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076)

Seq: QSIR01000009.1 [Ruminococcus] gnavus strain AM32-6 AM32-6.Scaf9, whole genome shotgun sequence (117678 bp)
Overview 1 RT 1: 53385-60043 bp Neighborhood of RT #1 [53385, 60051] AraC Acetyltransf_1 lant_SP_1948 RVT-GII GIIM Tra8 LanM-like Feature: gene Location: 53385-54239 bp Feature: domain Description: AraC Location: 53415-53715 bp Feature: domain Description: AraC Location: 53415-53715 bp Feature: domain Description: Acetyltransf_1 Location: 53826-54069 bp Feature: domain Description: Acetyltransf_1 Location: 53826 -5406 9 bp Feature: gene Location: 54854-55036 bp Feature: domain Description: lant_SP_1948 Location: 54911-54989 bp Feature: domain Description: lant_SP_1948 Location: 54911-54989 bp Feature: gene Location: 55575-56045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55578-55719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55578-55719 bp Feature: domain Description: GIIM Note: maturase Location: 55791-55977 bp Feature: domain Description: GIIM Note: maturase Location: 55791-55977 bp Feature: gene Location: 55964-56620 bp Feature: domain Description: Tra8 Location: 56078-56525 bp Feature: domain Description: Tra8 Location: 56 078-56 525 bp Feature: gene Location: 57022-60051 bp Feature: domain Description: LanM-like Location: 57478-60043 bp Feature: domain Description: LanM-like Location: 57478-6 0043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), Acetyltransf_1 (pfam00583), lant_SP_1948 (TIGR03893), RVT-GII, GIIM (pfam08388), Tra8 (COG2826), LanM-like (cd04792)