myRT

myRT report for GCA_003468695.1_ASM346869v1

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Seq: QSIX01000018.1 Bacteroides ovatus strain AM32-14LB AM32-14LB.Scaf18, whole genome shotgun sequence (143470 bp)
Overview 1 RT 1: 27349-28892 bp Neighborhood of RT #1 [27349, 28892] HTH_28 RVT-GII Feature: gene Location: 27349-27501 bp Feature: gene Location: 27679-27969 bp Feature: domain Description: HTH_28 Location: 27703-27844 bp Feature: domain Description: HTH_28 Location: 27703-27844 bp Feature: gene Location: 28090-28287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28093-28285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28093-28285 bp Feature: gene Location: 28317-28526 bp Feature: gene Location: 28530-28892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QSIX01000020.1 Bacteroides ovatus strain AM32-14LB AM32-14LB.Scaf20, whole genome shotgun sequence (133179 bp)
Overview 1 RT 1: 52491-64933 bp Neighborhood of RT #1 [52491, 65049] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 52491-52964 bp Feature: gene Location: 53630-55837 bp Feature: gene Location: 56061-57191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56382-56925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56382 -5692 5 bp Feature: gene Location: 57193-63150 bp Feature: domain Description: DUF4011 Location: 58423-58936 bp Feature: domain Description: DUF4011 Location: 5842 3-58936 bp Feature: domain Description: DEXXQc_SF1 Location: 59275-59893 bp Feature: domain Description: DEXXQc_SF1 Location: 592 75-59893 bp Feature: domain Description: DEXXQc_SF1 Location: 60703-61462 bp Feature: domain Description: DEXXQc_SF1 Location: 60703-61462 bp Feature: domain Description: TIGR00376 Location: 61591-61981 bp Feature: domain Description: TIGR00376 Location: 61591-61981 bp Feature: domain Description: MTES_1575 Location: 62134-62419 bp Feature: domain Description: MTES_1575 Location: 62 134-62 419 bp Feature: domain Description: DUF3320 Location: 62659-62800 bp Feature: domain Description: DUF332 0 Location: 62 659-62 800 bp Feature: gene Location: 63247-65049 bp Feature: domain Description: rpsA Location: 63316-64933 bp Feature: domain Description: rpsA Location: 63316-64933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSIX01000026.1 Bacteroides ovatus strain AM32-14LB AM32-14LB.Scaf26, whole genome shotgun sequence (101623 bp)
Overview 1 RT 1: 66103-74882 bp Neighborhood of RT #1 [66103, 74882] AAA_25 dnaG RVT-GII Intron_maturas2 Toprim_2 MobC Relaxase RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 66103-67176 bp Feature: domain Description: AAA_25 Location: 66259-66724 bp Feature: domain Description: AAA_25 Location: 66259-66724 bp Feature: gene Location: 67199-67522 bp Feature: domain Description: dnaG Location: 67406-67508 bp Feature: domain Description: dnaG Location: 67406-67508 bp Feature: gene Location: 68070-69878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68334-69156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 3 4-69156 bp Feature: domain Description: Intron_maturas2 Location: 69225-69534 bp Feature: domain Description: Intron_maturas2 Location: 69225-6953 4 bp Feature: gene Location: 69850-70788 bp Feature: domain Description: Toprim_2 Location: 70402-70681 bp Feature: domain Description: Toprim_2 Location: 70402-70681 bp Feature: gene Location: 70936-71319 bp Feature: domain Description: MobC Location: 71152-71281 bp Feature: domain Description: MobC Location: 71152-71281 bp Feature: gene Location: 71285-71626 bp Feature: domain Description: Relaxase Location: 71312-71618 bp Feature: domain Description: Relaxase Location: 713 12-71618 bp Feature: gene Location: 72179-73984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72443-73265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72443 -73 265 bp Feature: domain Description: Intron_maturas2 Location: 73343-73649 bp Feature: domain Description: Intron_maturas2 Location: 73 3 43 -73 649 bp Feature: domain Description: HNHc Note: nucleases Location: 73811-73955 bp Feature: domain Description: HNHc Note: nucleases Location: 73 811-73 955 bp Feature: gene Location: 74096-74686 bp Feature: domain Description: Relaxase Location: 74099-74480 bp Feature: domain Description: Relaxase Location: 74099-74480 bp Feature: gene Location: 74691-74882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), MobC (pfam05713), Relaxase (pfam03432), HNHc (smart00507)

Seq: QSIX01000027.1 Bacteroides ovatus strain AM32-14LB AM32-14LB.Scaf27, whole genome shotgun sequence (92178 bp)
Overview 1 RT 1: 26369-33588 bp Neighborhood of RT #1 [26369, 33602] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 26369-27664 bp Feature: domain Description: Bac_Flav_CT_G Location: 26372-27641 bp Feature: domain Description: Bac_Flav_CT_G Location: 26372-2764 1 bp Feature: gene Location: 27722-28222 bp Feature: gene Location: 28230-30038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28494-29316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284 94 -29316 bp Feature: domain Description: Intron_maturas2 Location: 29385-29697 bp Feature: domain Description: Intron_maturas2 Location: 29385-29697 bp Feature: domain Description: HNHc Note: nucleases Location: 29871-30012 bp Feature: domain Description: HNHc Note: nucleases Location: 29871-30012 bp Feature: gene Location: 30028-30708 bp Feature: domain Description: Bac_Flav_CT_G Location: 30154-30694 bp Feature: domain Description: Bac_Flav_CT_G Location: 30154 -30694 bp Feature: gene Location: 30736-30909 bp Feature: gene Location: 31255-33066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31519-32341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31519-3234 1 bp Feature: domain Description: Intron_maturas2 Location: 32416-32731 bp Feature: domain Description: Intron_maturas2 Location: 324 16-32731 bp Feature: domain Description: HNHc Note: nucleases Location: 32887-33037 bp Feature: domain Description: HNHc Note: nucleases Location: 32887-33037 bp Feature: gene Location: 33144-33422 bp Feature: domain Description: Bac_Flav_CT_G Location: 33162-33420 bp Feature: domain Description: Bac_Flav_CT_G Location: 33162-334 20 bp Feature: gene Location: 33429-33602 bp Feature: domain Description: Bac_Flav_CT_G Location: 33432-33588 bp Feature: domain Description: Bac_Flav_CT_G Location: 334 32-33588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSIX01000003.1 Bacteroides ovatus strain AM32-14LB AM32-14LB.Scaf3, whole genome shotgun sequence (275322 bp)
Overview 1 RT 1: 89961-93128 bp Neighborhood of RT #1 [89961, 93157] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 89961-90197 bp Feature: gene Location: 90204-90686 bp Feature: gene Location: 90755-92245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91148-91745 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91148-91745 bp Feature: gene Location: 92497-92808 bp Feature: domain Description: HTH_XRE Location: 92611-92767 bp Feature: domain Description: HTH_XRE Location: 92611-92767 bp Feature: gene Location: 92813-93157 bp Feature: domain Description: Gp49 Location: 92867-93128 bp Feature: domain Description: Gp49 Location: 92867-93128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)