myRT

myRT report for GCA_003468865.1_ASM346886v1

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Seq: QSJJ01000018.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf18, whole genome shotgun sequence (81198 bp)
Overview 1 RT 1: 64304-70769 bp Neighborhood of RT #1 [64304, 70780] TMAO_torS MutS_I RVT-DGRs Avd_like BF2867_like_N DUF1566 Feature: gene Location: 64304-66616 bp Feature: domain Description: TMAO_torS Location: 65186-66476 bp Feature: domain Description: TMAO_torS Location: 651 86-66476 bp Feature: gene Location: 66600-67115 bp Feature: domain Description: MutS_I Location: 66654-66849 bp Feature: domain Description: MutS_I Location: 66654-66849 bp Feature: gene Location: 67112-68374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67340-68030 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67340-68030 bp Feature: gene Location: 68660-69034 bp Feature: domain Description: Avd_like Location: 68687-68993 bp Feature: domain Description: Avd_like Location: 68687-68993 bp Feature: gene Location: 69128-70780 bp Feature: domain Description: BF2867_like_N Location: 69167-69638 bp Feature: domain Description: BF2867_like_N Location: 691 67-69638 bp Feature: domain Description: DUF1566 Location: 70499-70769 bp Feature: domain Description: DUF1 566 Location: 70499-70769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120), DUF1566 (pfam07603)

Seq: QSJJ01000002.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf2, whole genome shotgun sequence (544343 bp)
Overview 1 RT 1: 272052-275425 bp Neighborhood of RT #1 [272052, 275517] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 272052-272417 bp Feature: domain Description: COG3943 Location: 272094-272349 bp Feature: domain Description: COG3943 Location: 2 72 094-2 72 349 bp Feature: gene Location: 272682-273557 bp Feature: gene Location: 273588-274445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 273750-274275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 73750-2 742 75 bp Feature: gene Location: 274470-274685 bp Feature: gene Location: 275152-275517 bp Feature: domain Description: HTH_17 Location: 275287-275425 bp Feature: domain Description: HTH_17 Location: 2 752 87-2 7542 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: QSJJ01000022.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf22, whole genome shotgun sequence (59087 bp)
Overview 1 RT 1: 12738-21065 bp Neighborhood of RT #1 [12738, 21070] comF COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like PRK00409 Smr Feature: gene Location: 12738-13685 bp Feature: domain Description: comF Location: 13233-13659 bp Feature: domain Description: comF Location: 13 23 3 -13 659 bp Feature: gene Location: 13863-14276 bp Feature: domain Description: COG3943 Location: 13929-14214 bp Feature: domain Description: COG3 943 Location: 13 929-14214 bp Feature: gene Location: 14502-16310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14766-15588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14766-15588 bp Feature: domain Description: Intron_maturas2 Location: 15714-15969 bp Feature: domain Description: Intron_maturas2 Location: 15714-15969 bp Feature: gene Location: 16861-18117 bp Feature: domain Description: Arm-DNA-bind_5 Location: 16978-17236 bp Feature: domain Description: Arm-DNA-bind_5 Location: 16978-1723 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 17275-17593 bp Feature: domain Description: Phage_int_SAM_5 Location: 17275-17593 bp Feature: domain Description: INTN1_C_like Location: 17635-18100 bp Feature: domain Description: INTN1_C_like Location: 1763 5-18100 bp Feature: gene Location: 18533-21070 bp Feature: domain Description: PRK00409 Location: 18551-20465 bp Feature: domain Description: PRK00409 Location: 18551-20465 bp Feature: domain Description: Smr Location: 20843-21065 bp Feature: domain Description: Smr Location: 20843 -21065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT comF (TIGR00201), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), Smr (pfam01713)

Seq: QSJJ01000023.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf23, whole genome shotgun sequence (32063 bp)
Overview 1 RT 1: 17077-22522 bp Neighborhood of RT #1 [17077, 23496] TMAO_torS MutS_I RVT-DGRs Avd_like BF2867_like_N Feature: gene Location: 17077-19428 bp Feature: domain Description: TMAO_torS Location: 17998-19087 bp Feature: domain Description: TMAO_torS Location: 17998-19087 bp Feature: gene Location: 19430-19906 bp Feature: domain Description: MutS_I Location: 19481-19676 bp Feature: domain Description: MutS_I Location: 194 81-19676 bp Feature: gene Location: 19903-21165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20131-20821 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20131-20821 bp Feature: gene Location: 21455-21844 bp Feature: domain Description: Avd_like Location: 21497-21803 bp Feature: domain Description: Avd_like Location: 214 97-21803 bp Feature: gene Location: 21934-23496 bp Feature: domain Description: BF2867_like_N Location: 21970-22522 bp Feature: domain Description: BF2867_like_N Location: 21970-22522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120)

Seq: QSJJ01000003.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf3, whole genome shotgun sequence (391015 bp)
Overview 1 RT 1: 8645-12542 bp 2 RT 2: 33537-39451 bp 3 RT 3: 43333-49818 bp Neighborhood of RT #1 [8645, 12542] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 INTN1_C_like Neighborhood of RT #2 [33537, 39489] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [43333, 49818] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 8645-9667 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8681-8942 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8681-8942 bp Feature: domain Description: Phage_int_SAM_5 Location: 8981-9284 bp Feature: domain Description: Phage_int_SAM_5 Location: 8981-9284 bp Feature: domain Description: INTN1_C_like Location: 9338-9644 bp Feature: domain Description: INTN1_C_like Location: 9338-9644 bp Feature: gene Location: 9897-10085 bp Feature: gene Location: 10209-12026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10473-11295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10473-11295 bp Feature: domain Description: Intron_maturas2 Location: 11370-11676 bp Feature: domain Description: Intron_maturas2 Location: 11370-11676 bp Feature: gene Location: 12034-12363 bp Feature: domain Description: INTN1_C_like Location: 12142-12319 bp Feature: domain Description: INTN1_C_like Location: 12142-12319 bp Feature: gene Location: 12405-12542 bp Feature: gene Location: 33537-34151 bp Feature: gene Location: 34157-34633 bp Feature: domain Description: Bac_Flav_CT_G Location: 34184-34598 bp Feature: domain Description: Bac_Flav_CT_G Location: 34184-345 98 bp Feature: gene Location: 34711-36525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34975-35797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34975 -35 797 bp Feature: domain Description: Intron_maturas2 Location: 35872-36190 bp Feature: domain Description: Intron_maturas2 Location: 35 872-36190 bp Feature: domain Description: HNHc Note: nucleases Location: 36346-36496 bp Feature: domain Description: HNHc Note: nucleases Location: 36346-36496 bp Feature: gene Location: 37073-39169 bp Feature: domain Description: Bac_Flav_CT_G Location: 37076-39155 bp Feature: domain Description: Bac_Flav_CT_G Location: 37076-3915 5 bp Feature: gene Location: 39166-39489 bp Feature: domain Description: DUF4133 Location: 39181-39451 bp Feature: domain Description: DUF4133 Location: 39181-3945 1 bp Feature: gene Location: 43333-44595 bp Feature: domain Description: Relaxase Location: 43474-43933 bp Feature: domain Description: Relaxase Location: 43474-43933 bp Feature: domain Description: Relaxase Location: 44143-44356 bp Feature: domain Description: Relaxase Location: 44143-4435 6 bp Feature: gene Location: 44658-45581 bp Feature: domain Description: YWFCY Location: 44664-44841 bp Feature: domain Description: YWFCY Location: 44664-44841 bp Feature: gene Location: 46218-47870 bp Feature: RT Description: RVT_N Location: 46272-46515 bp Feature: RT Description: RVT_N Location: 46272-465 15 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46560-47208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465 60-47208 bp Feature: domain Description: GIIM Note: maturase Location: 47262-47493 bp Feature: domain Description: GIIM Note: maturase Location: 47262-47493 bp Feature: gene Location: 47875-49110 bp Feature: domain Description: TraG-D_C Location: 48457-48790 bp Feature: domain Description: TraG-D_C Location: 4845 7-48790 bp Feature: gene Location: 49282-49818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), Bac_Flav_CT_G (TIGR03783), HNHc (smart00507), DUF4133 (pfam13571), Relaxase (pfam03432), YWFCY (pfam14293)
RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSJJ01000035.1 Bacteroides uniformis strain AM30-49 AM30-49.Scaf35, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 115-2355 bp Neighborhood of RT #1 [115, 2355] RVT-GII Intron_maturas2 Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: gene Location: 2212-2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)