myRT

myRT report for GCA_003468875.1_ASM346887v1

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Seq: QSJK01000001.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf1, whole genome shotgun sequence (444784 bp)
Overview 1 RT 1: 91345-103725 bp Neighborhood of RT #1 [91345, 103856] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 91345-92169 bp Feature: domain Description: PDDEXK_2 Location: 91366-92044 bp Feature: domain Description: PDDEXK_2 Location: 91 366-92044 bp Feature: gene Location: 92338-94545 bp Feature: gene Location: 94753-95883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95074-95617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95074-9561 7 bp Feature: gene Location: 95934-101960 bp Feature: domain Description: DUF4011 Location: 97164-97677 bp Feature: domain Description: DUF401 1 Location: 971 64-97677 bp Feature: domain Description: DEXXQc_SF1 Location: 98016-98445 bp Feature: domain Description: DEXXQc_SF1 Location: 9801 6-98445 bp Feature: domain Description: DEXXQc_SF1 Location: 99444-100203 bp Feature: domain Description: DEXXQc_SF1 Location: 99444-1 00203 bp Feature: domain Description: TIGR00376 Location: 100332-100722 bp Feature: domain Description: TIGR00376 Location: 1 00332-1 00722 bp Feature: domain Description: MTES_1575 Location: 100875-101160 bp Feature: domain Description: MTES_1 575 Location: 1 00875-1 01 1 60 bp Feature: domain Description: DUF3320 Location: 101475-101610 bp Feature: domain Description: DUF3320 Location: 1 01 475-1 01 61 0 bp Feature: gene Location: 102057-103856 bp Feature: domain Description: rpsA Location: 102126-103725 bp Feature: domain Description: rpsA Location: 1 021 26-1 03725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSJK01000023.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf23, whole genome shotgun sequence (100208 bp)
Overview 1 RT 1: 340-6123 bp Neighborhood of RT #1 [340, 6236] KOG4768 RVT-GII Intron_maturas2 Trehalase GDB1 SGSH Feature: gene Location: 340-531 bp Feature: domain Description: KOG4768 Location: 397-529 bp Feature: domain Description: KOG4768 Location: 397-52 9 bp Feature: gene Location: 571-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-643 bp Feature: domain Description: Intron_maturas2 Location: 715-1024 bp Feature: domain Description: Intron_maturas2 Location: 715-102 4 bp Feature: gene Location: 1514-4261 bp Feature: domain Description: Trehalase Location: 2780-3041 bp Feature: domain Description: Trehalase Location: 2 780-3041 bp Feature: domain Description: GDB1 Location: 3125-3893 bp Feature: domain Description: GDB1 Location: 312 5-3893 bp Feature: gene Location: 4650-6236 bp Feature: domain Description: SGSH Location: 4794-6123 bp Feature: domain Description: SGSH Location: 4794-612 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, Intron_maturas2 (pfam01348), Trehalase (pfam01204), GDB1 (COG3408), SGSH (cd16027)

Seq: QSJK01000025.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf25, whole genome shotgun sequence (99348 bp)
Overview 1 RT 1: 26195-31584 bp Neighborhood of RT #1 [26195, 31584] REC RVT-Retrons Feature: gene Location: 26195-27886 bp Feature: domain Description: REC Location: 27002-27233 bp Feature: domain Description: REC Location: 27002-2723 3 bp Feature: gene Location: 27895-28539 bp Feature: gene Location: 28517-30736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28718-29303 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28718-293 03 bp Feature: gene Location: 31026-31217 bp Feature: gene Location: 31450-31584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons

Seq: QSJK01000003.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf3, whole genome shotgun sequence (268000 bp)
Overview 1 RT 1: 163820-167053 bp Neighborhood of RT #1 [163820, 167053] RVT-UG27 Feature: gene Location: 163820-164098 bp Feature: gene Location: 164128-164394 bp Feature: gene Location: 164444-165709 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 164633-165269 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 164 633-165269 bp Feature: gene Location: 165727-166353 bp Feature: gene Location: 166397-167053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSJK01000004.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf4, whole genome shotgun sequence (205083 bp)
Overview 1 RT 1: 106456-109720 bp Neighborhood of RT #1 [106456, 109881] RVT-GII GIIM PHA00447 HU-HIG Feature: gene Location: 106456-106707 bp Feature: gene Location: 106861-106998 bp Feature: gene Location: 107132-108598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107522-108137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075 22-108137 bp Feature: domain Description: GIIM Note: maturase Location: 108191-108404 bp Feature: domain Description: GIIM Note: maturase Location: 108191-108404 bp Feature: gene Location: 108694-109107 bp Feature: domain Description: PHA00447 Location: 108706-109084 bp Feature: domain Description: PHA00447 Location: 108706-109084 bp Feature: gene Location: 109393-109881 bp Feature: domain Description: HU-HIG Location: 109399-109720 bp Feature: domain Description: HU-HIG Location: 109399-109720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA00447 (lysozyme), HU-HIG (pfam18291)

Seq: QSJK01000079.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf79, whole genome shotgun sequence (2452 bp)
Overview 1 RT 1: 653-1943 bp Neighborhood of RT #1 [653, 2350] RVT_N RVT-GII GIIM Feature: gene Location: 653-2350 bp Feature: domain Description: RVT_N Location: 722-965 bp Feature: domain Description: RVT_N Location: 722-96 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-16 58 bp Feature: domain Description: GIIM Note: maturase Location: 1709-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1709-1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJK01000080.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf80, whole genome shotgun sequence (2403 bp)
Overview 1 RT 1: 95-1379 bp Neighborhood of RT #1 [95, 1777] RVT_N RVT-GII GIIM Feature: gene Location: 95-1777 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1094 bp Feature: domain Description: GIIM Note: maturase Location: 1145-1379 bp Feature: domain Description: GIIM Note: maturase Location: 1145-137 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJK01000082.1 Bacteroides xylanisolvens strain AM30-47 AM30-47.Scaf82, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)