myRT

myRT report for GCA_003468905.1_ASM346890v1

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Seq: QSJM01000011.1 Bacteroides vulgatus strain AM30-40 AM30-40.Scaf11, whole genome shotgun sequence (86589 bp)
Overview 1 RT 1: 4951-8909 bp Neighborhood of RT #1 [4951, 8909] RVT-UG27 Feature: gene Location: 4951-5607 bp Feature: gene Location: 5651-6277 bp Feature: gene Location: 6295-7560 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 6484-7120 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 6484-71 20 bp Feature: gene Location: 7883-8380 bp Feature: gene Location: 8430-8909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSJM01000002.1 Bacteroides vulgatus strain AM30-40 AM30-40.Scaf2, whole genome shotgun sequence (174747 bp)
Overview 1 RT 1: 114816-120138 bp Neighborhood of RT #1 [114816, 124259] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 114816-115058 bp Feature: gene Location: 115238-115723 bp Feature: gene Location: 115720-117024 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 115933-116527 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 115933-11652 7 bp Feature: gene Location: 117126-117344 bp Feature: gene Location: 117540-124259 bp Feature: domain Description: Laminin_G_3 Location: 118983-119061 bp Feature: domain Description: Laminin_G_3 Location: 118983-119061 bp Feature: domain Description: Laminin_G_3 Location: 119712-120138 bp Feature: domain Description: Laminin_G_3 Location: 119712 -12 0138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QSJM01000036.1 Bacteroides vulgatus strain AM30-40 AM30-40.Scaf36, whole genome shotgun sequence (50803 bp)
Overview 1 RT 1: 39596-43468 bp Neighborhood of RT #1 [39596, 43482] DUF3872 Toprim_2 RVT-GII Intron_maturas2 dnaG Feature: gene Location: 39596-40102 bp Feature: domain Description: DUF3872 Location: 39647-40034 bp Feature: domain Description: DUF3 872 Location: 3 9647-4003 4 bp Feature: gene Location: 40121-40963 bp Feature: domain Description: Toprim_2 Location: 40685-40937 bp Feature: domain Description: Toprim_2 Location: 40685-4093 7 bp Feature: gene Location: 40935-42743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41199-42021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41199-42021 bp Feature: domain Description: Intron_maturas2 Location: 42090-42399 bp Feature: domain Description: Intron_maturas2 Location: 42090-423 99 bp Feature: gene Location: 43032-43175 bp Feature: gene Location: 43291-43482 bp Feature: domain Description: dnaG Location: 43369-43468 bp Feature: domain Description: dnaG Location: 43 3 69-43 468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3872 (pfam12988), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), dnaG (TIGR01391)