myRT

myRT report for GCA_003468945.1_ASM346894v1

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Seq: QSJR01000001.1 Ruminococcus sp. AM30-15AC AM30-15AC.Scaf1, whole genome shotgun sequence (327189 bp)
Overview 1 RT 1: 130400-134448 bp Neighborhood of RT #1 [130400, 134448] RVT-DGRs Feature: gene Location: 130400-130546 bp Feature: gene Location: 130562-130729 bp Feature: gene Location: 130710-131909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 131091-131667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 31 091 -1 31 667 bp Feature: gene Location: 131988-132461 bp Feature: gene Location: 132487-134448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSJR01000015.1 Ruminococcus sp. AM30-15AC AM30-15AC.Scaf15, whole genome shotgun sequence (94384 bp)
Overview 1 RT 1: 36-4422 bp Neighborhood of RT #1 [36, 4799] RVT-UNC Methylase_S N6_Mtase N6_Mtase Feature: gene Location: 36-476 bp Feature: gene Location: 578-2296 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1103-1529 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1103-152 9 bp Feature: gene Location: 2453-2986 bp Feature: domain Description: Methylase_S Location: 2474-2930 bp Feature: domain Description: Methylase_S Location: 2 474-2 930 bp Feature: gene Location: 2973-4799 bp Feature: domain Description: N6_Mtase Location: 3783-4188 bp Feature: domain Description: N6_Mtase Location: 3783-4188 bp Feature: domain Description: N6_Mtase Location: 4248-4422 bp Feature: domain Description: N6_Mtase Location: 42 48-442 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiK/RVT-UG12/RVT-UG15/RVT-UG8(RVT-UNC), Methylase_S (pfam01420), N6_Mtase (pfam02384)

Seq: QSJR01000040.1 Ruminococcus sp. AM30-15AC AM30-15AC.Scaf40, whole genome shotgun sequence (20477 bp)
Overview 1 RT 1: 41-3413 bp Neighborhood of RT #1 [41, 3427] RVT-GII GIIM InsQ Y1_Tnp Feature: gene Location: 41-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254-869 bp Feature: domain Description: GIIM Note: maturase Location: 935-1154 bp Feature: domain Description: GIIM Note: maturase Location: 93 5-1154 bp Feature: gene Location: 1913-3169 bp Feature: domain Description: InsQ Location: 1988-3122 bp Feature: domain Description: InsQ Location: 1988-3 122 bp Feature: gene Location: 3188-3427 bp Feature: domain Description: Y1_Tnp Location: 3257-3413 bp Feature: domain Description: Y1_Tnp Location: 3 257-3 413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675), Y1_Tnp (pfam01797)

Seq: QSJR01000044.1 Ruminococcus sp. AM30-15AC AM30-15AC.Scaf44, whole genome shotgun sequence (17187 bp)
Overview 1 RT 1: 437-2799 bp Neighborhood of RT #1 [437, 2945] RVT-GII HxlR AAA_18 Feature: gene Location: 437-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-14 90 bp Feature: gene Location: 1952-2320 bp Feature: domain Description: HxlR Location: 2000-2315 bp Feature: domain Description: HxlR Location: 2000-2315 bp Feature: gene Location: 2400-2945 bp Feature: domain Description: AAA_18 Location: 2421-2799 bp Feature: domain Description: AAA_18 Location: 24 21-2799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HxlR (pfam01638), AAA_18 (pfam13238)

Seq: QSJR01000063.1 Ruminococcus sp. AM30-15AC AM30-15AC.Scaf63, whole genome shotgun sequence (5768 bp)
Overview 1 RT 1: 1649-5447 bp Neighborhood of RT #1 [1649, 5476] DUF4160 RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 1649-1903 bp Feature: domain Description: DUF4160 Location: 1676-1868 bp Feature: domain Description: DUF4160 Location: 1676-1868 bp Feature: gene Location: 1841-2203 bp Feature: gene Location: 2306-2848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312-2492 bp Feature: domain Description: GIIM Note: maturase Location: 2573-2777 bp Feature: domain Description: GIIM Note: maturase Location: 25 73-2777 bp Feature: gene Location: 2914-4170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118-3775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118-3775 bp Feature: domain Description: GIIM Note: maturase Location: 3859-4072 bp Feature: domain Description: GIIM Note: maturase Location: 385 9-4072 bp Feature: gene Location: 4201-4389 bp Feature: gene Location: 4441-4584 bp Feature: gene Location: 4691-5476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4946-5447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4946-5 447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), RVT-GII, GIIM (pfam08388)