myRT

myRT report for GCA_003468975.1_ASM346897v1

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Seq: QSJT01000032.1 Bacteroides ovatus strain AM30-13 AM30-13.Scaf32, whole genome shotgun sequence (77462 bp)
Overview 1 RT 1: 169-12445 bp Neighborhood of RT #1 [169, 12561] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 169-993 bp Feature: domain Description: PDDEXK_2 Location: 190-868 bp Feature: domain Description: PDDEXK_2 Location: 1 90-868 bp Feature: gene Location: 1160-3367 bp Feature: gene Location: 3573-4703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3894-4437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3894-4437 bp Feature: gene Location: 4705-10662 bp Feature: domain Description: DUF4011 Location: 5935-6448 bp Feature: domain Description: DUF401 1 Location: 5935-6448 bp Feature: domain Description: DEXXQc_SF1 Location: 6787-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 6787-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 8215-8974 bp Feature: domain Description: DEXXQc_SF1 Location: 821 5-8974 bp Feature: domain Description: TIGR00376 Location: 9106-9493 bp Feature: domain Description: TIGR00376 Location: 91 06-9493 bp Feature: domain Description: MTES_1575 Location: 9646-9931 bp Feature: domain Description: MTES_1 575 Location: 9646-9931 bp Feature: domain Description: DUF3320 Location: 10171-10312 bp Feature: domain Description: DUF3320 Location: 1 01 71 -1 031 2 bp Feature: gene Location: 10759-12561 bp Feature: domain Description: rpsA Location: 10828-12445 bp Feature: domain Description: rpsA Location: 1 0828-1 2445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSJT01000038.1 Bacteroides ovatus strain AM30-13 AM30-13.Scaf38, whole genome shotgun sequence (60253 bp)
Overview 1 RT 1: 29281-39222 bp Neighborhood of RT #1 [29281, 39605] PRK13351 PRK13351 RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 29281-31206 bp Feature: domain Description: PRK13351 Location: 29284-29749 bp Feature: domain Description: PRK13351 Location: 2 92 84-2 9749 bp Feature: domain Description: PRK13351 Location: 29797-31132 bp Feature: domain Description: PRK13351 Location: 2 9797-31132 bp Feature: gene Location: 31863-33176 bp Feature: gene Location: 33130-34797 bp Feature: domain Description: RVT_N Location: 33184-33427 bp Feature: domain Description: RVT_N Location: 33184-3342 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33472-34120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33472 -3412 0 bp Feature: domain Description: GIIM Note: maturase Location: 34174-34405 bp Feature: domain Description: GIIM Note: maturase Location: 34174-34405 bp Feature: gene Location: 34779-35093 bp Feature: gene Location: 35454-39605 bp Feature: domain Description: N6_Mtase Location: 35496-35853 bp Feature: domain Description: N6_Mtase Location: 35496-35853 bp Feature: domain Description: COG4646 Location: 36939-39222 bp Feature: domain Description: COG4646 Location: 36939-392 2 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QSJT01000004.1 Bacteroides ovatus strain AM30-13 AM30-13.Scaf4, whole genome shotgun sequence (332468 bp)
Overview 1 RT 1: 221228-225161 bp Neighborhood of RT #1 [221228, 225161] RVT-UG27 Feature: gene Location: 221228-221875 bp Feature: gene Location: 221889-222557 bp Feature: gene Location: 222550-223812 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 222742-223378 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 222742-223 3 78 bp Feature: gene Location: 224135-224632 bp Feature: gene Location: 224682-225161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSJT01000008.1 Bacteroides ovatus strain AM30-13 AM30-13.Scaf8, whole genome shotgun sequence (266461 bp)
Overview 1 RT 1: 72143-77335 bp Neighborhood of RT #1 [72143, 77346] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 72143-73081 bp Feature: domain Description: Bac_Flav_CT_G Location: 72146-73067 bp Feature: domain Description: Bac_Flav_CT_G Location: 7214 6-73067 bp Feature: gene Location: 73260-73409 bp Feature: gene Location: 73665-75326 bp Feature: domain Description: RVT_N Location: 73719-73962 bp Feature: domain Description: RVT_N Location: 73719-73962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74007-74655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 007-74 655 bp Feature: domain Description: GIIM Note: maturase Location: 74709-74940 bp Feature: domain Description: GIIM Note: maturase Location: 74 709-74 94 0 bp Feature: gene Location: 75323-77017 bp Feature: domain Description: Bac_Flav_CT_G Location: 75443-77009 bp Feature: domain Description: Bac_Flav_CT_G Location: 754 4 3-77009 bp Feature: gene Location: 77032-77346 bp Feature: domain Description: DUF3876 Location: 77086-77335 bp Feature: domain Description: DUF3876 Location: 77086-77335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)