myRT

myRT report for GCA_003469045.1_ASM346904v1

Download annotations/find similar RTs

Seq: QSKA01000014.1 Dorea formicigenerans strain AM29-11 AM29-11.Scaf14, whole genome shotgun sequence (84184 bp)
Overview 1 RT 1: 72829-84062 bp Neighborhood of RT #1 [72829, 84073] IscR RpfG SpaA CollagenBindB SpaA RVT-GII HTH_30 IscR HDGYP Feature: gene Location: 72829-73992 bp Feature: domain Description: IscR Location: 72832-73231 bp Feature: domain Description: IscR Location: 72832-73231 bp Feature: domain Description: RpfG Location: 73393-73954 bp Feature: domain Description: RpfG Location: 73393-73954 bp Feature: gene Location: 74291-80422 bp Feature: domain Description: SpaA Location: 78752-78947 bp Feature: domain Description: SpaA Location: 78752-78947 bp Feature: domain Description: CollagenBindB Location: 79121-79349 bp Feature: domain Description: CollagenBindB Location: 791 21 -79349 bp Feature: domain Description: SpaA Location: 79538-79793 bp Feature: domain Description: SpaA Location: 79538-79793 bp Feature: gene Location: 81079-81768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81289-81514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 289-81 51 4 bp Feature: domain Description: HTH_30 Location: 81571-81727 bp Feature: domain Description: HTH_30 Location: 81 571 -81 727 bp Feature: gene Location: 82167-82481 bp Feature: gene Location: 82586-84073 bp Feature: domain Description: IscR Location: 82616-83018 bp Feature: domain Description: IscR Location: 8261 6-8301 8 bp Feature: domain Description: HDGYP Location: 83318-84062 bp Feature: domain Description: HDGYP Location: 8331 8-84062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), RpfG (COG3437), SpaA (pfam17802), CollagenBindB (cl15753), RVT-GII, HTH_30 (pfam13556), HDGYP (COG2206)

Seq: QSKA01000040.1 Dorea formicigenerans strain AM29-11 AM29-11.Scaf40, whole genome shotgun sequence (9149 bp)
Overview 1 RT 1: 2147-6969 bp Neighborhood of RT #1 [2147, 6983] XRE HipB COG2932 RVT_N RVT-GII GIIM PRK03103 LexA_DNA_bind Feature: gene Location: 2147-2347 bp Feature: domain Description: XRE Location: 2159-2342 bp Feature: domain Description: XRE Location: 2 159-2 342 bp Feature: gene Location: 2404-3135 bp Feature: domain Description: HipB Location: 2416-2632 bp Feature: domain Description: HipB Location: 2 416-2 632 bp Feature: domain Description: COG2932 Location: 2788-3100 bp Feature: domain Description: COG2 932 Location: 2 788-3100 bp Feature: gene Location: 3956-5431 bp Feature: RT Description: RVT_N Location: 4007-4244 bp Feature: RT Description: RVT_N Location: 4007-42 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4295-4943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 95-4943 bp Feature: domain Description: GIIM Note: maturase Location: 4994-5228 bp Feature: domain Description: GIIM Note: maturase Location: 4994-52 2 8 bp Feature: gene Location: 5428-6756 bp Feature: domain Description: PRK03103 Location: 5554-6688 bp Feature: domain Description: PRK03103 Location: 5554-6688 bp Feature: gene Location: 6771-6983 bp Feature: domain Description: LexA_DNA_bind Location: 6780-6969 bp Feature: domain Description: LexA_DNA_bind Location: 6780-6969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed), LexA_DNA_bind (pfam01726)

Seq: QSKA01000053.1 Dorea formicigenerans strain AM29-11 AM29-11.Scaf53, whole genome shotgun sequence (1401 bp)
Overview 1 RT 1: 86-1217 bp Neighborhood of RT #1 [86, 1399] RVT-GII GIIM Feature: gene Location: 86-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 26-941 bp Feature: domain Description: GIIM Note: maturase Location: 1001-1217 bp Feature: domain Description: GIIM Note: maturase Location: 1001-1217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)