myRT

myRT report for GCA_003469305.1_ASM346930v1

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Seq: QSJF01000011.1 Bacteroides fragilis strain AM31-13AC AM31-13AC.Scaf11, whole genome shotgun sequence (181612 bp)
Overview 1 RT 1: 33795-38359 bp Neighborhood of RT #1 [33795, 38359] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 33795-34205 bp Feature: domain Description: Cas_Cmr5 Location: 33843-34089 bp Feature: domain Description: Cas_Cmr5 Location: 33843-34089 bp Feature: gene Location: 34208-35152 bp Feature: domain Description: Cmr6_III-B Location: 34364-35141 bp Feature: domain Description: Cmr6_III-B Location: 34364-351 41 bp Feature: gene Location: 35172-37442 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35379-35985 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35379-35985 bp Feature: domain Description: Cas1_I-II-III Location: 36444-37401 bp Feature: domain Description: Cas1 _I-II-III Location: 36444-37401 bp Feature: gene Location: 37436-37726 bp Feature: domain Description: Cas2_I_II_III Location: 37463-37673 bp Feature: domain Description: Cas2_I_II_III Location: 37463-37673 bp Feature: gene Location: 38150-38359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: QSJF01000029.1 Bacteroides fragilis strain AM31-13AC AM31-13AC.Scaf29, whole genome shotgun sequence (20749 bp)
Overview 1 RT 1: 6512-11809 bp Neighborhood of RT #1 [6512, 11844] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 6512-6757 bp Feature: domain Description: Bac_Flav_CT_G Location: 6515-6740 bp Feature: domain Description: Bac_Flav_CT_G Location: 6515-6740 bp Feature: gene Location: 6969-7115 bp Feature: gene Location: 7313-9040 bp Feature: domain Description: RVT_N Location: 7418-7661 bp Feature: domain Description: RVT_N Location: 7418-7661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7706-8354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7706-8354 bp Feature: domain Description: GIIM Note: maturase Location: 8405-8639 bp Feature: domain Description: GIIM Note: maturase Location: 8405-8639 bp Feature: gene Location: 9021-11429 bp Feature: domain Description: Bac_Flav_CT_G Location: 9141-11400 bp Feature: domain Description: Bac_Flav_CT_G Location: 9141-11400 bp Feature: gene Location: 11458-11844 bp Feature: domain Description: DUF3876 Location: 11548-11809 bp Feature: domain Description: DUF3876 Location: 11548-11809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSJF01000045.1 Bacteroides fragilis strain AM31-13AC AM31-13AC.Scaf45, whole genome shotgun sequence (2374 bp)
Overview 1 RT 1: 76-2195 bp Neighborhood of RT #1 [76, 2195] RVT_N RVT-GII GIIM Feature: gene Location: 76-1728 bp Feature: domain Description: RVT_N Location: 130-373 bp Feature: domain Description: RVT_N Location: 13 0-3 73 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1351 bp Feature: domain Description: GIIM Note: maturase Location: 1120-13 51 bp Feature: gene Location: 1894-2028 bp Feature: gene Location: 2046-2195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJF01000005.1 Bacteroides fragilis strain AM31-13AC AM31-13AC.Scaf5, whole genome shotgun sequence (283109 bp)
Overview 1 RT 1: 170124-179089 bp Neighborhood of RT #1 [170124, 179091] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 170124-171038 bp Feature: domain Description: RNase_Z Location: 170139-171030 bp Feature: domain Description: RNase_Z Location: 170139-171030 bp Feature: gene Location: 171189-172982 bp Feature: domain Description: rpsA Location: 171267-172875 bp Feature: domain Description: rpsA Location: 171267-172875 bp Feature: gene Location: 173124-174236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 173439-173988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1734 39-173988 bp Feature: gene Location: 174443-176662 bp Feature: gene Location: 176902-179091 bp Feature: domain Description: GlnA3 Location: 176977-179089 bp Feature: domain Description: GlnA3 Location: 176977-179089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)