myRT

myRT report for GCA_003469365.1_ASM346936v1

Download annotations/find similar RTs

Seq: QSJP01000011.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf11, whole genome shotgun sequence (207690 bp)
Overview 1 RT 1: 101798-113755 bp Neighborhood of RT #1 [101798, 113755] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 101798-103597 bp Feature: domain Description: rpsA Location: 101867-103481 bp Feature: domain Description: rpsA Location: 1 01 867-1 03481 bp Feature: gene Location: 103766-109594 bp Feature: domain Description: DUF4011 Location: 104921-105434 bp Feature: domain Description: DUF401 1 Location: 1 04921 -1 05434 bp Feature: domain Description: DEXXQc_SF1 Location: 105773-106364 bp Feature: domain Description: DEXXQc_SF1 Location: 1 05773-1 06364 bp Feature: domain Description: DEXXQc_SF1 Location: 107210-107960 bp Feature: domain Description: DEXXQc_SF1 Location: 1 0721 0-1 07960 bp Feature: domain Description: SF1_C_Upf1 Location: 107969-108482 bp Feature: domain Description: SF1 _C_Upf1 Location: 1 07969-1 08482 bp Feature: domain Description: MTES_1575 Location: 108632-108920 bp Feature: domain Description: MTES_1 575 Location: 1 08632-1 08920 bp Feature: domain Description: DUF3320 Location: 109100-109244 bp Feature: domain Description: DUF3320 Location: 1 091 00-1 09244 bp Feature: gene Location: 109628-110761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109952-110504 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 09952-1 1 0504 bp Feature: gene Location: 110967-113153 bp Feature: gene Location: 113555-113755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QSJP01000012.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf12, whole genome shotgun sequence (192535 bp)
Overview 1 RT 1: 29930-32945 bp Neighborhood of RT #1 [29930, 32945] BACON RVT-GII GIIM RVT-GII Feature: gene Location: 29930-30325 bp Feature: domain Description: BACON Location: 30035-30314 bp Feature: domain Description: BACON Location: 30035-30314 bp Feature: gene Location: 30676-30933 bp Feature: gene Location: 31033-31722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31054-31456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31054-31456 bp Feature: domain Description: GIIM Note: maturase Location: 31468-31699 bp Feature: domain Description: GIIM Note: maturase Location: 31468-31699 bp Feature: gene Location: 31725-32213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32061-32199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 061-32 199 bp Feature: gene Location: 32503-32748 bp Feature: gene Location: 32817-32945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BACON (pfam13004), RVT-GII, GIIM (pfam08388)

Seq: QSJP01000002.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf2, whole genome shotgun sequence (466972 bp)
Overview 1 RT 1: 310068-314060 bp Neighborhood of RT #1 [310068, 314065] ALP RVT-GII PRK00529 Feature: gene Location: 310068-311471 bp Feature: domain Description: ALP Location: 310137-311463 bp Feature: domain Description: ALP Location: 3 1013 7-3 11463 bp Feature: gene Location: 311501-311761 bp Feature: gene Location: 311981-312943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312317-312932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 123 17-3 1293 2 bp Feature: gene Location: 313112-313384 bp Feature: gene Location: 313499-314065 bp Feature: domain Description: PRK00529 Location: 313502-314060 bp Feature: domain Description: PRK00529 Location: 3 13 502-3 14060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALP (pfam17527), RVT-GII, PRK00529 (elongation factor P; Validated)

Seq: QSJP01000021.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf21, whole genome shotgun sequence (116735 bp)
Overview 1 RT 1: 51925-55158 bp Neighborhood of RT #1 [51925, 55158] RVT-UG27 Feature: gene Location: 51925-52203 bp Feature: gene Location: 52233-52499 bp Feature: gene Location: 52549-53814 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52738-53374 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52738-53374 bp Feature: gene Location: 53832-54458 bp Feature: gene Location: 54502-55158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSJP01000003.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf3, whole genome shotgun sequence (422812 bp)
Overview 1 RT 1: 97831-101031 bp 2 RT 2: 293820-305205 bp Neighborhood of RT #1 [97831, 101031] Gp49 HTH_XRE RVT-DGRs Neighborhood of RT #2 [293820, 305205] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 97831-98175 bp Feature: domain Description: Gp49 Location: 97885-98143 bp Feature: domain Description: Gp49 Location: 97885 -98143 bp Feature: gene Location: 98180-98491 bp Feature: domain Description: HTH_XRE Location: 98294-98447 bp Feature: domain Description: HTH_XRE Location: 98294-98447 bp Feature: gene Location: 98738-100228 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99131-99728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99131-99728 bp Feature: gene Location: 100296-100802 bp Feature: gene Location: 100786-101031 bp Feature: gene Location: 293820-294965 bp Feature: domain Description: Arm-DNA-bind_5 Location: 293844-294090 bp Feature: domain Description: Arm-DNA-bind_5 Location: 293844-294090 bp Feature: domain Description: Phage_int_SAM_5 Location: 294129-294414 bp Feature: domain Description: Phage_int_SAM_5 Location: 294129-294414 bp Feature: domain Description: INTN1_C_like Location: 294453-294927 bp Feature: domain Description: INTN1_C_like Location: 29445 3-294927 bp Feature: gene Location: 295016-295510 bp Feature: gene Location: 295512-296867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 295788-296379 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 295 788-296379 bp Feature: gene Location: 297241-304029 bp Feature: domain Description: Laminin_G_3 Location: 299677-300058 bp Feature: domain Description: Laminin_G_3 Location: 299677-30005 8 bp Feature: domain Description: CotH Location: 300322-301366 bp Feature: domain Description: CotH Location: 300322-301366 bp Feature: domain Description: LRR_AMN1 Location: 301783-302254 bp Feature: domain Description: LRR_AMN1 Location: 301783-30225 4 bp Feature: gene Location: 304039-305205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: QSJP01000035.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf35, whole genome shotgun sequence (61728 bp)
Overview 1 RT 1: 45131-50320 bp Neighborhood of RT #1 [45131, 50334] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 45131-45445 bp Feature: domain Description: DUF3876 Location: 45185-45434 bp Feature: domain Description: DUF3876 Location: 45185-45434 bp Feature: gene Location: 45460-47154 bp Feature: domain Description: Bac_Flav_CT_G Location: 45580-47146 bp Feature: domain Description: Bac_Flav_CT_G Location: 45580-47146 bp Feature: gene Location: 47151-48812 bp Feature: domain Description: RVT_N Location: 47205-47448 bp Feature: domain Description: RVT_N Location: 47205-47448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47493-48141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47493-48141 bp Feature: domain Description: GIIM Note: maturase Location: 48195-48426 bp Feature: domain Description: GIIM Note: maturase Location: 48195-48426 bp Feature: gene Location: 48894-49274 bp Feature: gene Location: 49396-50334 bp Feature: domain Description: Bac_Flav_CT_G Location: 49399-50320 bp Feature: domain Description: Bac_Flav_CT_G Location: 49399-50320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJP01000004.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf4, whole genome shotgun sequence (340264 bp)
Overview 1 RT 1: 246145-249524 bp Neighborhood of RT #1 [246145, 249524] RVT-DGRs Feature: gene Location: 246145-247464 bp Feature: gene Location: 247494-247697 bp Feature: gene Location: 247981-248796 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248314-248638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248314-248638 bp Feature: gene Location: 248762-248992 bp Feature: gene Location: 248940-249524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSJP01000064.1 Bacteroides thetaiotaomicron strain AM30-26 AM30-26.Scaf64, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 115-2355 bp Neighborhood of RT #1 [115, 2355] RVT-GII Intron_maturas2 Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: gene Location: 2212-2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)