myRT

myRT report for GCA_003469415.1_ASM346941v1

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Seq: QSJU01000001.1 Bacteroides uniformis strain AM29-4LB AM29-4LB.Scaf1, whole genome shotgun sequence (631382 bp)
Overview 1 RT 1: 183836-188768 bp Neighborhood of RT #1 [183836, 189031] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 183836-184759 bp Feature: domain Description: YWFCY Location: 183842-184019 bp Feature: domain Description: YWFCY Location: 1 83842-1 8401 9 bp Feature: gene Location: 185097-185231 bp Feature: gene Location: 185397-187049 bp Feature: domain Description: RVT_N Location: 185451-185694 bp Feature: domain Description: RVT_N Location: 1 85451 -1 85694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185739-186387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85739-1 86387 bp Feature: domain Description: GIIM Note: maturase Location: 186441-186672 bp Feature: domain Description: GIIM Note: maturase Location: 1 86441 -1 86672 bp Feature: gene Location: 187054-188280 bp Feature: domain Description: TraG-D_C Location: 187636-187969 bp Feature: domain Description: TraG-D_C Location: 1 87636-1 87969 bp Feature: gene Location: 188498-189031 bp Feature: domain Description: DUF4326 Location: 188513-188768 bp Feature: domain Description: DUF4326 Location: 1 8851 3-1 88768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QSJU01000023.1 Bacteroides uniformis strain AM29-4LB AM29-4LB.Scaf23, whole genome shotgun sequence (46815 bp)
Overview 1 RT 1: 4203-7493 bp Neighborhood of RT #1 [4203, 7493] IS285 RVT_N RVT-GII GIIM Feature: gene Location: 4203-5408 bp Feature: domain Description: IS285 Location: 4242-5397 bp Feature: domain Description: IS2 85 Location: 42 42 -5397 bp Feature: gene Location: 5421-5771 bp Feature: gene Location: 5780-7270 bp Feature: domain Description: RVT_N Location: 5849-6092 bp Feature: domain Description: RVT_N Location: 5849-6092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6137-6782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6137-6782 bp Feature: domain Description: GIIM Note: maturase Location: 6836-7070 bp Feature: domain Description: GIIM Note: maturase Location: 6836-7070 bp Feature: gene Location: 6855-7136 bp Feature: gene Location: 7194-7493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJU01000031.1 Bacteroides uniformis strain AM29-4LB AM29-4LB.Scaf31, whole genome shotgun sequence (24258 bp)
Overview 1 RT 1: 8781-14463 bp Neighborhood of RT #1 [8781, 16601] YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 8781-9707 bp Feature: domain Description: YWFCY Location: 8790-8967 bp Feature: domain Description: YWFCY Location: 8790-8967 bp Feature: gene Location: 10045-10179 bp Feature: gene Location: 10344-11996 bp Feature: domain Description: RVT_N Location: 10398-10641 bp Feature: domain Description: RVT_N Location: 103 98-10641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10686-11334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10686-113 3 4 bp Feature: domain Description: GIIM Note: maturase Location: 11388-11619 bp Feature: domain Description: GIIM Note: maturase Location: 113 88-11619 bp Feature: gene Location: 11917-13215 bp Feature: domain Description: TraG-D_C Location: 12583-12913 bp Feature: domain Description: TraG-D_C Location: 12583 -12913 bp Feature: gene Location: 13347-16601 bp Feature: domain Description: KAP_NTPase Location: 13485-14463 bp Feature: domain Description: KAP_NTPase Location: 13 485-14463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)

Seq: QSJU01000046.1 Bacteroides uniformis strain AM29-4LB AM29-4LB.Scaf46, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII matK HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 09-1231 bp Feature: domain Description: matK Location: 1405-1621 bp Feature: domain Description: matK Location: 14 05-1621 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: QSJU01000007.1 Bacteroides uniformis strain AM29-4LB AM29-4LB.Scaf7, whole genome shotgun sequence (185323 bp)
Overview 1 RT 1: 92220-95428 bp Neighborhood of RT #1 [92220, 95428] RVT-UG27 Feature: gene Location: 92220-92498 bp Feature: gene Location: 92528-92794 bp Feature: gene Location: 92844-94106 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 93036-93672 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 93036-93672 bp Feature: gene Location: 94099-94767 bp Feature: gene Location: 94781-95428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27