myRT

myRT report for GCA_003469435.1_ASM346943v1

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Seq: QSJV01000001.1 Bacteroides uniformis strain AM29-2AC AM29-2AC.Scaf1, whole genome shotgun sequence (446301 bp)
Overview 1 RT 1: 46-3417 bp Neighborhood of RT #1 [46, 3680] RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 46-1698 bp Feature: domain Description: RVT_N Location: 100-343 bp Feature: domain Description: RVT_N Location: 1 00-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1 036 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1321 bp Feature: domain Description: GIIM Note: maturase Location: 1 090-1 321 bp Feature: gene Location: 1703-2929 bp Feature: domain Description: TraG-D_C Location: 2285-2618 bp Feature: domain Description: TraG-D_C Location: 2285-261 8 bp Feature: gene Location: 3147-3680 bp Feature: domain Description: DUF4326 Location: 3162-3417 bp Feature: domain Description: DUF4326 Location: 31 62-341 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QSJV01000023.1 Bacteroides uniformis strain AM29-2AC AM29-2AC.Scaf23, whole genome shotgun sequence (46807 bp)
Overview 1 RT 1: 4197-7487 bp Neighborhood of RT #1 [4197, 7487] IS285 RVT_N RVT-GII GIIM Feature: gene Location: 4197-5402 bp Feature: domain Description: IS285 Location: 4236-5391 bp Feature: domain Description: IS2 85 Location: 42 36-5391 bp Feature: gene Location: 5415-5765 bp Feature: gene Location: 5774-7264 bp Feature: domain Description: RVT_N Location: 5843-6086 bp Feature: domain Description: RVT_N Location: 5843-6086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6776 bp Feature: domain Description: GIIM Note: maturase Location: 6830-7064 bp Feature: domain Description: GIIM Note: maturase Location: 6830-7064 bp Feature: gene Location: 6849-7130 bp Feature: gene Location: 7188-7487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSJV01000034.1 Bacteroides uniformis strain AM29-2AC AM29-2AC.Scaf34, whole genome shotgun sequence (13954 bp)
Overview 1 RT 1: 46-4165 bp Neighborhood of RT #1 [46, 6303] RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 46-1698 bp Feature: domain Description: RVT_N Location: 100-343 bp Feature: domain Description: RVT_N Location: 100-3 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 88-103 6 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1321 bp Feature: domain Description: GIIM Note: maturase Location: 1090-13 21 bp Feature: gene Location: 1703-2917 bp Feature: domain Description: TraG-D_C Location: 2285-2615 bp Feature: domain Description: TraG-D_C Location: 2285-2615 bp Feature: gene Location: 3049-6303 bp Feature: domain Description: KAP_NTPase Location: 3187-4165 bp Feature: domain Description: KAP_NTPase Location: 3 187-4165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)

Seq: QSJV01000049.1 Bacteroides uniformis strain AM29-2AC AM29-2AC.Scaf49, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII matK HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 09-1231 bp Feature: domain Description: matK Location: 1405-1621 bp Feature: domain Description: matK Location: 14 05-1621 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: QSJV01000008.1 Bacteroides uniformis strain AM29-2AC AM29-2AC.Scaf8, whole genome shotgun sequence (185311 bp)
Overview 1 RT 1: 89890-93823 bp Neighborhood of RT #1 [89890, 93823] RVT-UG27 Feature: gene Location: 89890-90537 bp Feature: gene Location: 90551-91219 bp Feature: gene Location: 91212-92474 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 91404-92040 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 91404-92040 bp Feature: gene Location: 92797-93294 bp Feature: gene Location: 93344-93823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27