myRT

myRT report for GCA_003469685.1_ASM346968v1

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Seq: QSLC01000001.1 Bacteroides thetaiotaomicron strain AM26-17LB AM26-17LB.Scaf1, whole genome shotgun sequence (1120401 bp)
Overview 1 RT 1: 1026711-1030213 bp Neighborhood of RT #1 [1026711, 1030242] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 1026711-1027004 bp Feature: gene Location: 1027202-1027480 bp Feature: gene Location: 1027443-1028864 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1027818-1028520 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 02781 8-1 028520 bp Feature: gene Location: 1028879-1029286 bp Feature: domain Description: Avd_like Location: 1028912-1029221 bp Feature: domain Description: Avd_like Location: 1 02891 2-1 029221 bp Feature: gene Location: 1029433-1030242 bp Feature: domain Description: DUF1566 Location: 1029964-1030213 bp Feature: domain Description: DUF1 566 Location: 1 029964-1 03021 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QSLC01000003.1 Bacteroides thetaiotaomicron strain AM26-17LB AM26-17LB.Scaf3, whole genome shotgun sequence (495648 bp)
Overview 1 RT 1: 114735-126369 bp Neighborhood of RT #1 [114735, 126369] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 114735-116534 bp Feature: domain Description: rpsA Location: 114804-116418 bp Feature: domain Description: rpsA Location: 114804-116418 bp Feature: gene Location: 116703-122531 bp Feature: domain Description: DUF4011 Location: 117858-118371 bp Feature: domain Description: DUF4011 Location: 117858-118371 bp Feature: domain Description: DEXXQc_SF1 Location: 118710-119310 bp Feature: domain Description: DEXXQc_SF1 Location: 118710-119310 bp Feature: domain Description: DEXXQc_SF1 Location: 120147-120897 bp Feature: domain Description: DEXXQc_SF1 Location: 12 0147-12 0897 bp Feature: domain Description: TIGR00376 Location: 121029-121419 bp Feature: domain Description: TIGR00376 Location: 12 102 9-12 1419 bp Feature: domain Description: MTES_1575 Location: 121569-121857 bp Feature: domain Description: MTES_1575 Location: 12 1569-12 1857 bp Feature: domain Description: DUF3320 Location: 122037-122181 bp Feature: domain Description: DUF332 0 Location: 12 2 037-12 2 181 bp Feature: gene Location: 122565-123698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122889-123441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 2 889-12 3441 bp Feature: gene Location: 123904-126090 bp Feature: gene Location: 126193-126369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QSLC01000004.1 Bacteroides thetaiotaomicron strain AM26-17LB AM26-17LB.Scaf4, whole genome shotgun sequence (446484 bp)
Overview 1 RT 1: 428988-433989 bp Neighborhood of RT #1 [428988, 433989] TPR TPR RVT-GII Intron_maturas2 HNHc Feature: gene Location: 428988-430724 bp Feature: domain Description: TPR Location: 429288-429492 bp Feature: domain Description: TPR Location: 429288-429492 bp Feature: domain Description: TPR Location: 429534-429834 bp Feature: domain Description: TPR Location: 42953 4-42983 4 bp Feature: gene Location: 431082-431291 bp Feature: gene Location: 431504-433315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431768-432590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 1768-43 2590 bp Feature: domain Description: Intron_maturas2 Location: 432659-432986 bp Feature: domain Description: Intron_maturas2 Location: 43 2659-43 2986 bp Feature: domain Description: HNHc Note: nucleases Location: 433142-433286 bp Feature: domain Description: HNHc Note: nucleases Location: 43 3 142-43 3 286 bp Feature: gene Location: 433431-433595 bp Feature: gene Location: 433789-433989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)