myRT

myRT report for GCA_003469745.1_ASM346974v1

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Seq: QSLG01000015.1 Bacteroides xylanisolvens strain AM26-1 AM26-1.Scaf15, whole genome shotgun sequence (133394 bp)
Overview 1 RT 1: 78445-90825 bp Neighborhood of RT #1 [78445, 90956] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 78445-79269 bp Feature: domain Description: PDDEXK_2 Location: 78466-79144 bp Feature: domain Description: PDDEXK_2 Location: 78466-791 44 bp Feature: gene Location: 79438-81645 bp Feature: gene Location: 81853-82983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82174-82717 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 821 74-8271 7 bp Feature: gene Location: 83034-89060 bp Feature: domain Description: DUF4011 Location: 84264-84777 bp Feature: domain Description: DUF401 1 Location: 84264-84777 bp Feature: domain Description: DEXXQc_SF1 Location: 85116-85539 bp Feature: domain Description: DEXXQc_SF1 Location: 851 1 6-85539 bp Feature: domain Description: DEXXQc_SF1 Location: 86544-87303 bp Feature: domain Description: DEXXQc_SF1 Location: 86544-87303 bp Feature: domain Description: KOG1803 Location: 87438-87816 bp Feature: domain Description: KOG1 803 Location: 87438-8781 6 bp Feature: domain Description: MTES_1575 Location: 87975-88260 bp Feature: domain Description: MTES_1 575 Location: 87975-88260 bp Feature: domain Description: DUF3320 Location: 88575-88710 bp Feature: domain Description: DUF3320 Location: 88575-8871 0 bp Feature: gene Location: 89157-90956 bp Feature: domain Description: rpsA Location: 89226-90825 bp Feature: domain Description: rpsA Location: 89226-90825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSLG01000002.1 Bacteroides xylanisolvens strain AM26-1 AM26-1.Scaf2, whole genome shotgun sequence (359976 bp)
Overview 1 RT 1: 92778-94750 bp Neighborhood of RT #1 [92778, 94836] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 92778-93194 bp Feature: domain Description: Translocase_SecB Location: 92835-93159 bp Feature: domain Description: Translocase_SecB Location: 92 835-93159 bp Feature: gene Location: 93223-93456 bp Feature: gene Location: 93861-94181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93864-94101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93864-94101 bp Feature: gene Location: 94238-94540 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 94286-94523 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 942 86-9452 3 bp Feature: gene Location: 94636-94836 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 94648-94750 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 94648-94750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)

Seq: QSLG01000021.1 Bacteroides xylanisolvens strain AM26-1 AM26-1.Scaf21, whole genome shotgun sequence (119001 bp)
Overview 1 RT 1: 17946-21934 bp Neighborhood of RT #1 [17946, 22008] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17946-18311 bp Feature: domain Description: HTH_17 Location: 18081-18219 bp Feature: domain Description: HTH_17 Location: 18081-18219 bp Feature: gene Location: 18651-18857 bp Feature: gene Location: 18891-20474 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19128-20088 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19128-20088 bp Feature: gene Location: 20486-21478 bp Feature: gene Location: 21643-22008 bp Feature: domain Description: COG3943 Location: 21682-21934 bp Feature: domain Description: COG3 943 Location: 21682-2193 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )

Seq: QSLG01000035.1 Bacteroides xylanisolvens strain AM26-1 AM26-1.Scaf35, whole genome shotgun sequence (69661 bp)
Overview 1 RT 1: 50787-62268 bp Neighborhood of RT #1 [50787, 62270] PRK13351 PRK13351 RVT_N RVT-GII YkfC N6_Mtase COG4646 DUF1896 Feature: gene Location: 50787-52781 bp Feature: domain Description: PRK13351 Location: 50835-51306 bp Feature: domain Description: PRK13351 Location: 50835-51306 bp Feature: domain Description: PRK13351 Location: 51351-52692 bp Feature: domain Description: PRK13351 Location: 51351-52692 bp Feature: gene Location: 53396-54709 bp Feature: gene Location: 54663-56399 bp Feature: domain Description: RVT_N Location: 54786-55029 bp Feature: domain Description: RVT_N Location: 54 786-55029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55074-55722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55074 -55722 bp Feature: domain Description: YkfC Location: 55932-56022 bp Feature: domain Description: YkfC Location: 55932-56022 bp Feature: gene Location: 57005-61693 bp Feature: domain Description: N6_Mtase Location: 57317-57920 bp Feature: domain Description: N6_Mtase Location: 57317-57920 bp Feature: domain Description: COG4646 Location: 59249-61310 bp Feature: domain Description: COG4 64 6 Location: 5924 9-61310 bp Feature: gene Location: 61683-62270 bp Feature: domain Description: DUF1896 Location: 61848-62268 bp Feature: domain Description: DUF1896 Location: 6184 8-62268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: QSLG01000070.1 Bacteroides xylanisolvens strain AM26-1 AM26-1.Scaf70, whole genome shotgun sequence (2212 bp)
Overview 1 RT 1: 277-1850 bp Neighborhood of RT #1 [277, 2107] RVT_N RVT-GII GIIM Feature: gene Location: 277-408 bp Feature: gene Location: 560-2107 bp Feature: domain Description: RVT_N Location: 629-872 bp Feature: domain Description: RVT_N Location: 629-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-15 62 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1616-185 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)