myRT

myRT report for GCA_003469855.1_ASM346985v1

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Seq: QSKH01000001.1 Bacteroides stercoris strain AM28-15 AM28-15.Scaf1, whole genome shotgun sequence (272290 bp)
Overview 1 RT 1: 249281-255103 bp Neighborhood of RT #1 [249281, 255103] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 249281-250537 bp Feature: domain Description: Arm-DNA-bind_5 Location: 249395-249641 bp Feature: domain Description: Arm-DNA-bind_5 Location: 249395-249641 bp Feature: domain Description: Phage_int_SAM_5 Location: 249689-249989 bp Feature: domain Description: Phage_int_SAM_5 Location: 249689-249989 bp Feature: domain Description: INTN1_C_like Location: 250052-250520 bp Feature: domain Description: INTN1 _C_like Location: 250052-250520 bp Feature: gene Location: 250726-250854 bp Feature: gene Location: 251088-252896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251352-252174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 352-2521 74 bp Feature: domain Description: Intron_maturas2 Location: 252300-252555 bp Feature: domain Description: Intron_maturas2 Location: 252300-252555 bp Feature: domain Description: HNHc Note: nucleases Location: 252729-252870 bp Feature: domain Description: HNHc Note: nucleases Location: 252729-252870 bp Feature: gene Location: 253114-254325 bp Feature: domain Description: Arm-DNA-bind_5 Location: 253141-253384 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2531 41 -253384 bp Feature: domain Description: Phage_int_SAM_5 Location: 253474-253726 bp Feature: domain Description: Phage_int_SAM_5 Location: 253474-253726 bp Feature: domain Description: INTN1_C_like Location: 253780-254257 bp Feature: domain Description: INTN1 _C_like Location: 253780-254257 bp Feature: gene Location: 254351-255103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSKH01000012.1 Bacteroides stercoris strain AM28-15 AM28-15.Scaf12, whole genome shotgun sequence (91583 bp)
Overview 1 RT 1: 78623-84604 bp Neighborhood of RT #1 [78623, 85998] RloB RVT-AbiP2 RVT-AbiP2 HSP70_NBD Feature: gene Location: 78623-78868 bp Feature: gene Location: 78694-79230 bp Feature: domain Description: RloB Location: 78790-79216 bp Feature: domain Description: RloB Location: 78790-792 16 bp Feature: gene Location: 79270-79872 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79699-79855 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79699-79855 bp Feature: gene Location: 79884-80792 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79887-80154 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79887-80154 bp Feature: gene Location: 80796-81599 bp Feature: gene Location: 83464-85998 bp Feature: domain Description: HSP70_NBD Location: 83488-84604 bp Feature: domain Description: HSP70_NBD Location: 83488-84604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RloB (pfam13707), RVT-AbiP2, HSP70_NBD (cd10170)

Seq: QSKH01000021.1 Bacteroides stercoris strain AM28-15 AM28-15.Scaf21, whole genome shotgun sequence (62032 bp)
Overview 1 RT 1: 9238-16123 bp Neighborhood of RT #1 [9238, 16123] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 9238-10785 bp Feature: domain Description: AAA_25 Location: 9853-10315 bp Feature: domain Description: AAA_25 Location: 9853 -103 15 bp Feature: gene Location: 10997-11179 bp Feature: gene Location: 11728-13536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11992-12814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11992-12814 bp Feature: domain Description: Intron_maturas2 Location: 12883-13192 bp Feature: domain Description: Intron_maturas2 Location: 12883 -13 192 bp Feature: gene Location: 13508-14437 bp Feature: domain Description: Toprim_2 Location: 14060-14348 bp Feature: domain Description: Toprim_2 Location: 14060-143 48 bp Feature: gene Location: 14720-16123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSKH01000022.1 Bacteroides stercoris strain AM28-15 AM28-15.Scaf22, whole genome shotgun sequence (61017 bp)
Overview 1 RT 1: 40425-45357 bp Neighborhood of RT #1 [40425, 45620] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 40425-41348 bp Feature: domain Description: YWFCY Location: 40431-40608 bp Feature: domain Description: YWFCY Location: 4 04 31-4 0608 bp Feature: gene Location: 41686-41820 bp Feature: gene Location: 41986-43638 bp Feature: domain Description: RVT_N Location: 42040-42283 bp Feature: domain Description: RVT_N Location: 4 204 0-4 2283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42328-42976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2328-4 2976 bp Feature: domain Description: GIIM Note: maturase Location: 43030-43261 bp Feature: domain Description: GIIM Note: maturase Location: 4 3030-4 3261 bp Feature: gene Location: 43643-44869 bp Feature: domain Description: TraG-D_C Location: 44225-44558 bp Feature: domain Description: TraG-D_C Location: 4 4 225-4 4 558 bp Feature: gene Location: 45087-45620 bp Feature: domain Description: DUF4326 Location: 45102-45357 bp Feature: domain Description: DUF4 326 Location: 4 5102-4 5357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QSKH01000027.1 Bacteroides stercoris strain AM28-15 AM28-15.Scaf27, whole genome shotgun sequence (55653 bp)
Overview 1 RT 1: 6367-10748 bp Neighborhood of RT #1 [6367, 10762] RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like GGGtGRT Feature: gene Location: 6367-6546 bp Feature: gene Location: 7072-7287 bp Feature: gene Location: 7312-8160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7471-7993 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7471-7993 bp Feature: gene Location: 8289-9386 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8319-8574 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8319-85 74 bp Feature: domain Description: Phage_int_SAM_5 Location: 8622-8940 bp Feature: domain Description: Phage_int_SAM_5 Location: 8622-8940 bp Feature: domain Description: INTN1_C_like Location: 8979-9342 bp Feature: domain Description: INTN1_C_like Location: 8979-9342 bp Feature: gene Location: 9752-10762 bp Feature: domain Description: GGGtGRT Location: 9773-10748 bp Feature: domain Description: GGGtGRT Location: 9773-10748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), GGGtGRT (pfam14057)