myRT

myRT report for GCA_003470085.1_ASM347008v1

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Seq: QSLA01000002.1 Bacteroides eggerthii strain AM26-26AC AM26-26AC.Scaf2, whole genome shotgun sequence (346101 bp)
Overview 1 RT 1: 341514-344370 bp Neighborhood of RT #1 [341514, 344438] RVT-Retrons COG3943 Feature: gene Location: 341514-341648 bp Feature: gene Location: 341797-342012 bp Feature: gene Location: 342038-342895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342200-342725 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342200-342725 bp Feature: gene Location: 342926-343807 bp Feature: gene Location: 344073-344438 bp Feature: domain Description: COG3943 Location: 344112-344370 bp Feature: domain Description: COG3943 Location: 3441 1 2-344370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: QSLA01000020.1 Bacteroides eggerthii strain AM26-26AC AM26-26AC.Scaf20, whole genome shotgun sequence (62944 bp)
Overview 1 RT 1: 44-4707 bp Neighborhood of RT #1 [44, 5276] RVT-UG3 INTN1_C_like Feature: gene Location: 44-1261 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 404-875 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 404-875 bp Feature: gene Location: 2775-2918 bp Feature: gene Location: 3417-5276 bp Feature: domain Description: INTN1_C_like Location: 4173-4707 bp Feature: domain Description: INTN1_C_like Location: 4173-4707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, INTN1_C_like (cd01185)

Seq: QSLA01000028.1 Bacteroides eggerthii strain AM26-26AC AM26-26AC.Scaf28, whole genome shotgun sequence (21077 bp)
Overview 1 RT 1: 151-6297 bp Neighborhood of RT #1 [151, 6297] RVT-UG8 Feature: gene Location: 151-2079 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 667-1102 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 667-1102 bp Feature: gene Location: 3823-4065 bp Feature: gene Location: 4405-6297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8

Seq: QSLA01000029.1 Bacteroides eggerthii strain AM26-26AC AM26-26AC.Scaf29, whole genome shotgun sequence (19378 bp)
Overview 1 RT 1: 2010-7637 bp Neighborhood of RT #1 [2010, 7678] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 2010-2189 bp Feature: gene Location: 2259-3425 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2289-2508 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2289-2508 bp Feature: domain Description: Phage_int_SAM_5 Location: 2583-2889 bp Feature: domain Description: Phage_int_SAM_5 Location: 2583-2889 bp Feature: domain Description: INTN1_C_like Location: 2940-3408 bp Feature: domain Description: INTN1_C_like Location: 294 0-34 08 bp Feature: gene Location: 3976-5784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4240-5062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 24 0-5062 bp Feature: domain Description: Intron_maturas2 Location: 5185-5440 bp Feature: domain Description: Intron_maturas2 Location: 5185-54 4 0 bp Feature: gene Location: 6000-7307 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6069-6324 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6069-6324 bp Feature: domain Description: Phage_int_SAM_5 Location: 6363-6666 bp Feature: domain Description: Phage_int_SAM_5 Location: 6363-6666 bp Feature: domain Description: INTN1_C_like Location: 6720-7194 bp Feature: domain Description: INTN1_C_like Location: 6720-7194 bp Feature: gene Location: 7367-7678 bp Feature: domain Description: HTH_17 Location: 7496-7637 bp Feature: domain Description: HTH_17 Location: 74 96-7637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HTH_17 (pfam12728)

Seq: QSLA01000052.1 Bacteroides eggerthii strain AM26-26AC AM26-26AC.Scaf52, whole genome shotgun sequence (2490 bp)
Overview 1 RT 1: 118-2487 bp Neighborhood of RT #1 [118, 2487] RVT_N RVT-GII GIIM Feature: gene Location: 118-1956 bp Feature: domain Description: RVT_N Location: 313-556 bp Feature: domain Description: RVT_N Location: 313-5 5 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1267 bp Feature: domain Description: GIIM Note: maturase Location: 1324-1558 bp Feature: domain Description: GIIM Note: maturase Location: 1324-15 5 8 bp Feature: gene Location: 2239-2487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)