myRT

myRT report for GCA_003470335.1_ASM347033v1

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Seq: QRHO01000001.1 Coprococcus comes strain AM23-3 AM23-3.Scaf1, whole genome shotgun sequence (475503 bp)
Overview 1 RT 1: 100057-104242 bp Neighborhood of RT #1 [100057, 104242] RVT_N RVT-GII Zn_Tnp_IS1595 Feature: gene Location: 100057-100359 bp Feature: gene Location: 100522-100917 bp Feature: gene Location: 100889-102286 bp Feature: RT Description: RVT_N Location: 100934-101174 bp Feature: RT Description: RVT_N Location: 1 00934-1 01 1 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101222-101963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 222-1 01 963 bp Feature: gene Location: 102950-103822 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 102983-103115 bp Feature: domain Description: Zn_Tnp_IS1 595 Location: 1 02983-1 031 1 5 bp Feature: gene Location: 103949-104242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Zn_Tnp_IS1595 (pfam12760)

Seq: QRHO01000010.1 Coprococcus comes strain AM23-3 AM23-3.Scaf10, whole genome shotgun sequence (100297 bp)
Overview 1 RT 1: 53239-59321 bp Neighborhood of RT #1 [53239, 59321] PrgI VirB4_CagE TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 53239-53685 bp Feature: domain Description: PrgI Location: 53251-53521 bp Feature: domain Description: PrgI Location: 532 51-5352 1 bp Feature: gene Location: 53678-55786 bp Feature: domain Description: VirB4_CagE Location: 53738-54146 bp Feature: domain Description: VirB4_CagE Location: 53738-54146 bp Feature: domain Description: TraC-F-type Location: 54536-55751 bp Feature: domain Description: TraC-F-type Location: 54536-55751 bp Feature: gene Location: 56282-58075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56549-57368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56549-57368 bp Feature: domain Description: Intron_maturas2 Location: 57458-57752 bp Feature: domain Description: Intron_maturas2 Location: 57458-57752 bp Feature: gene Location: 58222-58449 bp Feature: gene Location: 58521-59321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRHO01000007.1 Coprococcus comes strain AM23-3 AM23-3.Scaf7, whole genome shotgun sequence (130649 bp)
Overview 1 RT 1: 407-4884 bp Neighborhood of RT #1 [407, 4952] RVT-GII GIIM AcrR YhgE xxxLxxG_by_4 xxxLxxG_by_4 YhgE Feature: gene Location: 407-1801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-1349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-13 49 bp Feature: domain Description: GIIM Note: maturase Location: 1406-1622 bp Feature: domain Description: GIIM Note: maturase Location: 1406-1622 bp Feature: gene Location: 1873-2493 bp Feature: domain Description: AcrR Location: 1906-2464 bp Feature: domain Description: AcrR Location: 1906-2464 bp Feature: gene Location: 2691-4952 bp Feature: domain Description: YhgE Location: 3447-3894 bp Feature: domain Description: YhgE Location: 3 447-3 894 bp Feature: domain Description: xxxLxxG_by_4 Location: 3975-4047 bp Feature: domain Description: xxxLxxG_by_4 Location: 3 975-4047 bp Feature: domain Description: xxxLxxG_by_4 Location: 4221-4296 bp Feature: domain Description: xxxLxxG_by_4 Location: 4221-4296 bp Feature: domain Description: YhgE Location: 4446-4884 bp Feature: domain Description: YhgE Location: 4446-4884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), YhgE (COG1511), xxxLxxG_by_4 (TIGR03057), RVT-GII, GIIM (pfam08388)

Seq: QRHO01000090.1 Coprococcus comes strain AM23-3 AM23-3.Scaf90, whole genome shotgun sequence (1931 bp)
Overview 1 RT 1: 522-1737 bp Neighborhood of RT #1 [522, 1826] RVT-GII GIIM Feature: gene Location: 522-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-14 4 3 bp Feature: domain Description: GIIM Note: maturase Location: 1515-1737 bp Feature: domain Description: GIIM Note: maturase Location: 1515-1737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)