myRT

myRT report for GCA_003470485.1_ASM347048v1

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Seq: QRIP01000025.1 [Ruminococcus] gnavus strain AM21-41 AM21-41.Scaf25, whole genome shotgun sequence (55888 bp)
Overview 1 RT 1: 41829-49112 bp Neighborhood of RT #1 [41829, 49138] PRK10572 DUF4300 RVT-GII GIIM ebgA MelB Feature: gene Location: 41829-42680 bp Feature: domain Description: PRK10572 Location: 41955-42672 bp Feature: domain Description: PRK1 0572 Location: 41 955-42672 bp Feature: gene Location: 42842-43687 bp Feature: domain Description: DUF4300 Location: 42938-43682 bp Feature: domain Description: DUF4300 Location: 42938-43682 bp Feature: gene Location: 43876-44466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43882-43981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43882-43981 bp Feature: domain Description: GIIM Note: maturase Location: 44035-44251 bp Feature: domain Description: GIIM Note: maturase Location: 44035-44251 bp Feature: gene Location: 44687-47752 bp Feature: domain Description: ebgA Location: 44705-47738 bp Feature: domain Description: ebgA Location: 44705-47738 bp Feature: gene Location: 47759-49138 bp Feature: domain Description: MelB Location: 47768-49112 bp Feature: domain Description: MelB Location: 47768-491 1 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10572 (arabinose operon transcriptional regulator AraC), DUF4300 (pfam14133), RVT-GII, GIIM (pfam08388), ebgA (PRK10340), MelB (COG2211)

Seq: QRIP01000038.1 [Ruminococcus] gnavus strain AM21-41 AM21-41.Scaf38, whole genome shotgun sequence (23542 bp)
Overview 1 RT 1: 14552-21210 bp Neighborhood of RT #1 [14552, 21218] AraC Acetyltransf_1 lant_SP_1948 RVT-GII GIIM Tra8 LanM-like Feature: gene Location: 14552-15406 bp Feature: domain Description: AraC Location: 14582-14882 bp Feature: domain Description: AraC Location: 14582 -14882 bp Feature: domain Description: Acetyltransf_1 Location: 14993-15236 bp Feature: domain Description: Acetyltransf_1 Location: 14993-152 36 bp Feature: gene Location: 16021-16203 bp Feature: domain Description: lant_SP_1948 Location: 16078-16156 bp Feature: domain Description: lant_SP_1948 Location: 16078-16156 bp Feature: gene Location: 16742-17212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16745-16886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16745-16886 bp Feature: domain Description: GIIM Note: maturase Location: 16958-17144 bp Feature: domain Description: GIIM Note: maturase Location: 16958-17144 bp Feature: gene Location: 17131-17787 bp Feature: domain Description: Tra8 Location: 17245-17692 bp Feature: domain Description: Tra8 Location: 172 45-17692 bp Feature: gene Location: 18189-21218 bp Feature: domain Description: LanM-like Location: 18645-21210 bp Feature: domain Description: LanM-like Location: 18645-2 12 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), Acetyltransf_1 (pfam00583), lant_SP_1948 (TIGR03893), RVT-GII, GIIM (pfam08388), Tra8 (COG2826), LanM-like (cd04792)

Seq: QRIP01000079.1 [Ruminococcus] gnavus strain AM21-41 AM21-41.Scaf79, whole genome shotgun sequence (4017 bp)
Overview 1 RT 1: 764-3079 bp Neighborhood of RT #1 [764, 3906] COG3415 DDE_3 RVT-GII Feature: gene Location: 764-1930 bp Feature: domain Description: COG3415 Location: 860-1238 bp Feature: domain Description: COG3 415 Location: 860-123 8 bp Feature: domain Description: DDE_3 Location: 1430-1823 bp Feature: domain Description: DDE_3 Location: 143 0-1823 bp Feature: gene Location: 2080-3906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380-3079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 80-3 079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3415 (Transposase ), DDE_3 (pfam13358)