myRT

myRT report for GCA_003470495.1_ASM347049v1

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Seq: QRIQ01000015.1 Bacteroides uniformis strain AM21-40 AM21-40.Scaf15, whole genome shotgun sequence (111757 bp)
Overview 1 RT 1: 31-11497 bp Neighborhood of RT #1 [31, 11499] PRK13351 PRK13351 RVT_N RVT-GII YkfC N6_Mtase COG4646 DUF1896 Feature: gene Location: 31-2013 bp Feature: domain Description: PRK13351 Location: 79-550 bp Feature: domain Description: PRK1 3351 Location: 79-550 bp Feature: domain Description: PRK13351 Location: 595-1936 bp Feature: domain Description: PRK1 3351 Location: 595-1 936 bp Feature: gene Location: 2625-3938 bp Feature: gene Location: 3892-5628 bp Feature: domain Description: RVT_N Location: 4015-4258 bp Feature: domain Description: RVT_N Location: 401 5-4258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4303-4951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4303-4951 bp Feature: domain Description: YkfC Location: 5161-5251 bp Feature: domain Description: YkfC Location: 51 61 -5251 bp Feature: gene Location: 6234-10922 bp Feature: domain Description: N6_Mtase Location: 6546-7149 bp Feature: domain Description: N6_Mtase Location: 6546-71 49 bp Feature: domain Description: COG4646 Location: 8478-10539 bp Feature: domain Description: COG4646 Location: 8478-1 0539 bp Feature: gene Location: 10912-11499 bp Feature: domain Description: DUF1896 Location: 11077-11497 bp Feature: domain Description: DUF1 896 Location: 1 1 077-1 1 497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: QRIQ01000020.1 Bacteroides uniformis strain AM21-40 AM21-40.Scaf20, whole genome shotgun sequence (58914 bp)
Overview 1 RT 1: 39485-46444 bp Neighborhood of RT #1 [39485, 48582] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 39485-40732 bp Feature: domain Description: Relaxase Location: 39677-40037 bp Feature: domain Description: Relaxase Location: 39677-40037 bp Feature: gene Location: 40763-41689 bp Feature: domain Description: YWFCY Location: 40772-40949 bp Feature: domain Description: YWFCY Location: 40772 -40949 bp Feature: gene Location: 42325-43977 bp Feature: domain Description: RVT_N Location: 42379-42622 bp Feature: domain Description: RVT_N Location: 42 379-42 62 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42667-43315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 667-43315 bp Feature: domain Description: GIIM Note: maturase Location: 43369-43600 bp Feature: domain Description: GIIM Note: maturase Location: 43369-43600 bp Feature: gene Location: 43982-45196 bp Feature: domain Description: TraG-D_C Location: 44564-44894 bp Feature: domain Description: TraG-D_C Location: 44564-44894 bp Feature: gene Location: 45328-48582 bp Feature: domain Description: KAP_NTPase Location: 45466-46444 bp Feature: domain Description: KAP_NTPase Location: 45466-46444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)

Seq: QRIQ01000045.1 Bacteroides uniformis strain AM21-40 AM21-40.Scaf45, whole genome shotgun sequence (1643 bp)
Overview 1 RT 1: 40-1315 bp Neighborhood of RT #1 [40, 1641] RVT_N RVT-GII GIIM Feature: gene Location: 40-1641 bp Feature: domain Description: RVT_N Location: 94-337 bp Feature: domain Description: RVT_N Location: 94-3 3 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 82-103 0 bp Feature: domain Description: GIIM Note: maturase Location: 1084-1315 bp Feature: domain Description: GIIM Note: maturase Location: 1084-13 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRIQ01000005.1 Bacteroides uniformis strain AM21-40 AM21-40.Scaf5, whole genome shotgun sequence (300263 bp)
Overview 1 RT 1: 107643-119595 bp 2 RT 2: 152895-159109 bp Neighborhood of RT #1 [107643, 119595] purU Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG3 RVT-UG8 DEXHc_RE Eco57I Neighborhood of RT #2 [152895, 159282] BF2867_like_N DUF1566 Avd_like RVT-DGRs MutS_I BaeS PRK15347 Feature: gene Location: 107643-108527 bp Feature: domain Description: purU Location: 107673-108522 bp Feature: domain Description: purU Location: 107673-108522 bp Feature: gene Location: 108986-110335 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109265-109520 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109265-109520 bp Feature: domain Description: Phage_int_SAM_5 Location: 109562-109880 bp Feature: domain Description: Phage_int_SAM_5 Location: 109562-109880 bp Feature: domain Description: INTN1_C_like Location: 109919-110282 bp Feature: domain Description: INTN1_C_like Location: 109919-110282 bp Feature: gene Location: 110714-112174 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 111188-111704 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 111188-111704 bp Feature: gene Location: 112171-114342 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 112774-113227 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 112774 -113227 bp Feature: gene Location: 114619-118572 bp Feature: domain Description: DEXHc_RE Location: 115072-115573 bp Feature: domain Description: DEXHc_RE Location: 115072-115573 bp Feature: domain Description: Eco57I Location: 117583-117880 bp Feature: domain Description: Eco57I Location: 117583-117880 bp Feature: gene Location: 118579-119595 bp Feature: gene Location: 152895-154463 bp Feature: domain Description: BF2867_like_N Location: 152961-153423 bp Feature: domain Description: BF2867_like_N Location: 152961-1534 23 bp Feature: domain Description: DUF1566 Location: 154188-154452 bp Feature: domain Description: DUF1566 Location: 154 188-154 4 52 bp Feature: gene Location: 154556-154930 bp Feature: domain Description: Avd_like Location: 154583-154889 bp Feature: domain Description: Avd_like Location: 154 583-154 889 bp Feature: gene Location: 155216-156478 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 155444-156134 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1554 4 4 -156134 bp Feature: gene Location: 156475-156945 bp Feature: domain Description: MutS_I Location: 156529-156724 bp Feature: domain Description: MutS_I Location: 156529-156724 bp Feature: gene Location: 156958-159282 bp Feature: domain Description: BaeS Location: 157759-158533 bp Feature: domain Description: BaeS Location: 157759-158533 bp Feature: domain Description: PRK15347 Location: 158611-159109 bp Feature: domain Description: PRK1534 7 Location: 158611-159109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT purU (PRK13010), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG3, RVT-UG8, DEXHc_RE (cd17926), Eco57I (pfam07669), BF2867_like_N (cd13120), DUF1566 (pfam07603)
Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), BaeS (COG0642), PRK15347 (two component system sensor kinase)