myRT

myRT report for GCA_003470645.1_ASM347064v1

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Seq: QRJR01000011.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf11, whole genome shotgun sequence (166542 bp)
Overview 1 RT 1: 21590-25681 bp Neighborhood of RT #1 [21590, 25710] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 21590-21817 bp Feature: domain Description: DUF4141 Location: 21605-21758 bp Feature: domain Description: DUF41 41 Location: 21 605-21 758 bp Feature: gene Location: 21857-22018 bp Feature: gene Location: 22338-24173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22632-23454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22632-23454 bp Feature: domain Description: matK Location: 23631-23844 bp Feature: domain Description: matK Location: 23631 -23844 bp Feature: domain Description: HNHc Note: nucleases Location: 24006-24147 bp Feature: domain Description: HNHc Note: nucleases Location: 24006-241 47 bp Feature: gene Location: 24166-24702 bp Feature: gene Location: 24706-25710 bp Feature: domain Description: Bac_Flav_CT_J Location: 24712-25681 bp Feature: domain Description: Bac_Flav_CT_J Location: 2471 2-25681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRJR01000017.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf17, whole genome shotgun sequence (112414 bp)
Overview 1 RT 1: 103371-111950 bp Neighborhood of RT #1 [103371, 112300] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 103371-103505 bp Feature: gene Location: 104127-106334 bp Feature: gene Location: 106540-107670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106861-107404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106861-107404 bp Feature: gene Location: 107672-112300 bp Feature: domain Description: DUF4011 Location: 107795-108086 bp Feature: domain Description: DUF4011 Location: 107795-108086 bp Feature: domain Description: DEXXQc_SF1 Location: 108425-109265 bp Feature: domain Description: DEXXQc_SF1 Location: 10842 5-1092 65 bp Feature: domain Description: DEXXQc_SF1 Location: 109853-110612 bp Feature: domain Description: DEXXQc_SF1 Location: 109853-110612 bp Feature: domain Description: TIGR00376 Location: 110741-111131 bp Feature: domain Description: TIGR00376 Location: 110741-111131 bp Feature: domain Description: MTES_1575 Location: 111284-111569 bp Feature: domain Description: MTES_1575 Location: 1112 84-111569 bp Feature: domain Description: DUF3320 Location: 111809-111950 bp Feature: domain Description: DUF332 0 Location: 111809-111950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QRJR01000002.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf2, whole genome shotgun sequence (518846 bp)
Overview 1 RT 1: 403547-408869 bp Neighborhood of RT #1 [403547, 412990] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 403547-403789 bp Feature: gene Location: 403969-404454 bp Feature: gene Location: 404451-405755 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404664-405258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404664-405258 bp Feature: gene Location: 405857-406075 bp Feature: gene Location: 406271-412990 bp Feature: domain Description: Laminin_G_3 Location: 407714-407792 bp Feature: domain Description: Laminin_G_3 Location: 407714-407792 bp Feature: domain Description: Laminin_G_3 Location: 408443-408869 bp Feature: domain Description: Laminin_G_3 Location: 408443 -408869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QRJR01000051.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf51, whole genome shotgun sequence (32309 bp)
Overview 1 RT 1: 7795-13115 bp Neighborhood of RT #1 [7795, 13120] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 7795-8175 bp Feature: domain Description: DUF3876 Location: 7876-8140 bp Feature: domain Description: DUF3876 Location: 7876-814 0 bp Feature: gene Location: 8216-8806 bp Feature: domain Description: Bac_Flav_CT_G Location: 8333-8789 bp Feature: domain Description: Bac_Flav_CT_G Location: 8333-8789 bp Feature: gene Location: 8809-10509 bp Feature: RT Description: RVT_N Location: 8908-9151 bp Feature: RT Description: RVT_N Location: 8908-9151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9196-9844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9196-984 4 bp Feature: domain Description: GIIM Note: maturase Location: 9895-10129 bp Feature: domain Description: GIIM Note: maturase Location: 9895-10129 bp Feature: gene Location: 10547-10894 bp Feature: gene Location: 11087-13120 bp Feature: domain Description: Bac_Flav_CT_G Location: 11090-13115 bp Feature: domain Description: Bac_Flav_CT_G Location: 11090-13115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRJR01000007.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf7, whole genome shotgun sequence (279211 bp)
Overview 1 RT 1: 124375-127912 bp Neighborhood of RT #1 [124375, 127912] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 124375-125184 bp Feature: domain Description: DUF1566 Location: 124906-125155 bp Feature: domain Description: DUF15 66 Location: 124906-125 15 5 bp Feature: gene Location: 125331-125738 bp Feature: domain Description: Avd_like Location: 125364-125673 bp Feature: domain Description: Avd_like Location: 125 364-125 673 bp Feature: gene Location: 125753-127174 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126128-126830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126128-126830 bp Feature: gene Location: 127137-127415 bp Feature: gene Location: 127616-127912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QRJR01000076.1 Bacteroides ovatus strain AM17-48 AM17-48.Scaf76, whole genome shotgun sequence (2459 bp)
Overview 1 RT 1: 433-2455 bp Neighborhood of RT #1 [433, 2455] RVT-GII GIIM Feature: gene Location: 433-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628-1243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 28-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1315-1528 bp Feature: domain Description: GIIM Note: maturase Location: 1315-1528 bp Feature: gene Location: 1961-2125 bp Feature: gene Location: 2258-2455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)