myRT

myRT report for GCA_003470705.1_ASM347070v1

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Seq: QRKD01000001.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf1, whole genome shotgun sequence (1052203 bp)
Overview 1 RT 1: 612172-621615 bp Neighborhood of RT #1 [612172, 621615] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 612172-618891 bp Feature: domain Description: Laminin_G_3 Location: 613615-613693 bp Feature: domain Description: Laminin_G_3 Location: 61 361 5-61 3693 bp Feature: domain Description: Laminin_G_3 Location: 614344-614770 bp Feature: domain Description: Laminin_G_3 Location: 61 4344-61 4770 bp Feature: gene Location: 619135-619305 bp Feature: gene Location: 619407-620711 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 619620-620214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 9620-62021 4 bp Feature: gene Location: 620708-621193 bp Feature: gene Location: 621373-621615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: QRKD01000012.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf12, whole genome shotgun sequence (146015 bp)
Overview 1 RT 1: 109146-112161 bp Neighborhood of RT #1 [109146, 112161] BACON RVT-GII GIIM RVT-GII Feature: gene Location: 109146-109541 bp Feature: domain Description: BACON Location: 109251-109530 bp Feature: domain Description: BACON Location: 1092 51-109530 bp Feature: gene Location: 109550-109756 bp Feature: gene Location: 110075-110938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110096-110501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110096-110501 bp Feature: domain Description: GIIM Note: maturase Location: 110510-110741 bp Feature: domain Description: GIIM Note: maturase Location: 110510-110741 bp Feature: gene Location: 110941-111429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111277-111415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112 77-111415 bp Feature: gene Location: 111719-111964 bp Feature: gene Location: 112033-112161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BACON (pfam13004), RVT-GII, GIIM (pfam08388)

Seq: QRKD01000015.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf15, whole genome shotgun sequence (106487 bp)
Overview 1 RT 1: 76141-80074 bp Neighborhood of RT #1 [76141, 80074] RVT-UG27 Feature: gene Location: 76141-76788 bp Feature: gene Location: 76802-77470 bp Feature: gene Location: 77463-78725 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 77655-78291 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 77655-78291 bp Feature: gene Location: 79048-79545 bp Feature: gene Location: 79595-80074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRKD01000002.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf2, whole genome shotgun sequence (382759 bp)
Overview 1 RT 1: 116503-127885 bp Neighborhood of RT #1 [116503, 127885] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 116503-117645 bp Feature: domain Description: Arm-DNA-bind_5 Location: 116527-116773 bp Feature: domain Description: Arm-DNA-bind_5 Location: 116527-116773 bp Feature: domain Description: Phage_int_SAM_5 Location: 116812-117097 bp Feature: domain Description: Phage_int_SAM_5 Location: 116812-117097 bp Feature: domain Description: INTN1_C_like Location: 117133-117607 bp Feature: domain Description: INTN1_C_like Location: 117133-117607 bp Feature: gene Location: 117696-118190 bp Feature: gene Location: 118192-119547 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 118468-119059 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1184 68-119059 bp Feature: gene Location: 119921-126709 bp Feature: domain Description: Laminin_G_3 Location: 122357-122738 bp Feature: domain Description: Laminin_G_3 Location: 122357-122738 bp Feature: domain Description: CotH Location: 123002-124046 bp Feature: domain Description: CotH Location: 123002-124 04 6 bp Feature: domain Description: LRR_AMN1 Location: 124463-124934 bp Feature: domain Description: LRR_AMN1 Location: 124 4 63-124 934 bp Feature: gene Location: 126719-127885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: QRKD01000030.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf30, whole genome shotgun sequence (43346 bp)
Overview 1 RT 1: 21047-25634 bp Neighborhood of RT #1 [21047, 25666] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 21047-21418 bp Feature: gene Location: 21473-22786 bp Feature: domain Description: MPTase-PolyVal Location: 21740-22052 bp Feature: domain Description: MPTase-PolyVal Location: 21740-2205 2 bp Feature: gene Location: 22788-24599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23052-23874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2305 2-23874 bp Feature: domain Description: Intron_maturas2 Location: 24015-24255 bp Feature: domain Description: Intron_maturas2 Location: 24015 -2425 5 bp Feature: gene Location: 24730-24987 bp Feature: gene Location: 25163-25666 bp Feature: domain Description: DUF1738 Location: 25217-25634 bp Feature: domain Description: DUF1738 Location: 25 217-25 634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: QRKD01000037.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf37, whole genome shotgun sequence (33687 bp)
Overview 1 RT 1: 9790-15946 bp Neighborhood of RT #1 [9790, 15981] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 9790-10161 bp Feature: domain Description: DUF3876 Location: 9871-10144 bp Feature: domain Description: DUF3876 Location: 9871-10144 bp Feature: gene Location: 10176-10304 bp Feature: gene Location: 10399-12222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10663-11485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106 6 3-11485 bp Feature: domain Description: Intron_maturas2 Location: 11659-11902 bp Feature: domain Description: Intron_maturas2 Location: 116 59-11902 bp Feature: domain Description: HNHc Note: nucleases Location: 12013-12184 bp Feature: domain Description: HNHc Note: nucleases Location: 12013-12184 bp Feature: gene Location: 12791-15190 bp Feature: domain Description: Bac_Flav_CT_G Location: 12794-15179 bp Feature: domain Description: Bac_Flav_CT_G Location: 12794-15179 bp Feature: gene Location: 15187-15981 bp Feature: domain Description: DUF4133 Location: 15676-15946 bp Feature: domain Description: DUF4133 Location: 156 76 -15946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)

Seq: QRKD01000043.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf43, whole genome shotgun sequence (29437 bp)
Overview 1 RT 1: 15494-19595 bp Neighborhood of RT #1 [15494, 19595] DUF4326 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 15494-16027 bp Feature: domain Description: DUF4326 Location: 15509-15764 bp Feature: domain Description: DUF4326 Location: 15509-157 64 bp Feature: gene Location: 16245-17471 bp Feature: domain Description: TraG-D_C Location: 16827-17160 bp Feature: domain Description: TraG-D_C Location: 16827 -17 160 bp Feature: gene Location: 17476-19128 bp Feature: domain Description: RVT_N Location: 17530-17773 bp Feature: domain Description: RVT_N Location: 17 530-17 7 7 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17818-18466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 818-18466 bp Feature: domain Description: GIIM Note: maturase Location: 18520-18751 bp Feature: domain Description: GIIM Note: maturase Location: 18520-187 51 bp Feature: gene Location: 19294-19428 bp Feature: gene Location: 19446-19595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRKD01000047.1 Bacteroides caccae strain AM16-49B AM16-49B.Scaf47, whole genome shotgun sequence (26719 bp)
Overview 1 RT 1: 658-4654 bp Neighborhood of RT #1 [658, 4654] COG1373 RVT-AbiP2 Hypoth_Ymh Feature: gene Location: 658-1914 bp Feature: domain Description: COG1373 Location: 661-1894 bp Feature: domain Description: COG1373 Location: 661-18 94 bp Feature: gene Location: 1973-2512 bp Feature: gene Location: 2519-3496 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2525-2858 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2525-28 58 bp Feature: gene Location: 3521-4315 bp Feature: domain Description: Hypoth_Ymh Location: 3938-4292 bp Feature: domain Description: Hypoth_Ymh Location: 3938 -4292 bp Feature: gene Location: 4388-4654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509)