myRT

myRT report for GCA_003470745.1_ASM347074v1

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Seq: QRHD01000010.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf10, whole genome shotgun sequence (135537 bp)
Overview 1 RT 1: 41257-46025 bp Neighborhood of RT #1 [41257, 46025] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 41257-42333 bp Feature: domain Description: Bac_Flav_CT_G Location: 41260-41548 bp Feature: domain Description: Bac_Flav_CT_G Location: 41 260-41 548 bp Feature: domain Description: Bac_Flav_CT_G Location: 41947-42319 bp Feature: domain Description: Bac_Flav_CT_G Location: 41 947-4231 9 bp Feature: gene Location: 42368-42535 bp Feature: gene Location: 42881-44692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43145-43967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 45-43967 bp Feature: domain Description: Intron_maturas2 Location: 44039-44363 bp Feature: domain Description: Intron_maturas2 Location: 44039-44363 bp Feature: domain Description: HNHc Note: nucleases Location: 44501-44663 bp Feature: domain Description: HNHc Note: nucleases Location: 44501 -44663 bp Feature: gene Location: 44770-45291 bp Feature: domain Description: Bac_Flav_CT_G Location: 44788-45208 bp Feature: domain Description: Bac_Flav_CT_G Location: 44788-45208 bp Feature: gene Location: 45285-46025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRHD01000022.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf22, whole genome shotgun sequence (85780 bp)
Overview 1 RT 1: 12486-17168 bp Neighborhood of RT #1 [12486, 17168] Phage_Mu_F LPD3 RVT-DGRs Feature: gene Location: 12486-14231 bp Feature: domain Description: Phage_Mu_F Location: 13320-13605 bp Feature: domain Description: Phage_Mu_F Location: 1332 0-13605 bp Feature: domain Description: LPD3 Location: 13881-14154 bp Feature: domain Description: LPD3 Location: 13881-14154 bp Feature: gene Location: 14329-14562 bp Feature: gene Location: 14944-16245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15154-15751 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15154-15751 bp Feature: gene Location: 16242-16727 bp Feature: gene Location: 16926-17168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_Mu_F (pfam04233), LPD3 (pfam18798), RVT-DGRs

Seq: QRHD01000039.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf39, whole genome shotgun sequence (43248 bp)
Overview 1 RT 1: 31873-41316 bp Neighborhood of RT #1 [31873, 41316] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 31873-38592 bp Feature: domain Description: Laminin_G_3 Location: 33316-33394 bp Feature: domain Description: Laminin_G_3 Location: 3 3 3 16-3 3 3 94 bp Feature: domain Description: Laminin_G_3 Location: 34045-34471 bp Feature: domain Description: Laminin_G_3 Location: 3 4045-3 4471 bp Feature: gene Location: 38836-39006 bp Feature: gene Location: 39108-40412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39321-39915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 93 21-3 9915 bp Feature: gene Location: 40409-40894 bp Feature: gene Location: 41074-41316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: QRHD01000049.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf49, whole genome shotgun sequence (20759 bp)
Overview 1 RT 1: 202-5459 bp Neighborhood of RT #1 [202, 5482] RVT_N RVT-GII GIIM KOG0204 Feature: gene Location: 202-1692 bp Feature: RT Description: RVT_N Location: 271-511 bp Feature: RT Description: RVT_N Location: 271-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-1204 bp Feature: domain Description: GIIM Note: maturase Location: 1258-1492 bp Feature: domain Description: GIIM Note: maturase Location: 1258-14 92 bp Feature: gene Location: 1604-1924 bp Feature: gene Location: 2852-5482 bp Feature: domain Description: KOG0204 Location: 2888-5459 bp Feature: domain Description: KOG0204 Location: 2888-54 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG0204 (KOG0204, Calcium transporting ATPase )

Seq: QRHD01000052.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf52, whole genome shotgun sequence (15899 bp)
Overview 1 RT 1: 3154-13025 bp Neighborhood of RT #1 [3154, 13025] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 3154-5043 bp Feature: domain Description: KAP_NTPase Location: 3202-3289 bp Feature: domain Description: KAP_NTPase Location: 3202-3289 bp Feature: domain Description: KAP_NTPase Location: 3562-3838 bp Feature: domain Description: KAP_NTPase Location: 35 62-3838 bp Feature: gene Location: 5284-6363 bp Feature: gene Location: 6365-8032 bp Feature: RT Description: RVT_N Location: 6419-6662 bp Feature: RT Description: RVT_N Location: 6419-6662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6707-7355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6707-735 5 bp Feature: domain Description: GIIM Note: maturase Location: 7409-7640 bp Feature: domain Description: GIIM Note: maturase Location: 7409-7640 bp Feature: gene Location: 8691-12728 bp Feature: domain Description: N6_Mtase Location: 9201-9606 bp Feature: domain Description: N6_Mtase Location: 9201-9606 bp Feature: domain Description: COG4646 Location: 10383-12111 bp Feature: domain Description: COG4646 Location: 10383-12111 bp Feature: gene Location: 12861-13025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QRHD01000065.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf65, whole genome shotgun sequence (9471 bp)
Overview 1 RT 1: 2691-5588 bp Neighborhood of RT #1 [2691, 5588] RVT-DGRs Feature: gene Location: 2691-2924 bp Feature: gene Location: 2946-3203 bp Feature: gene Location: 3377-4678 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3590-4184 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3590-4184 bp Feature: gene Location: 4675-5160 bp Feature: gene Location: 5346-5588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRHD01000008.1 Bacteroides vulgatus strain AM25-23 AM25-23.Scaf8, whole genome shotgun sequence (156488 bp)
Overview 1 RT 1: 138-3507 bp Neighborhood of RT #1 [138, 3507] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 138-1946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402-1224 bp Feature: domain Description: Intron_maturas2 Location: 1293-1602 bp Feature: domain Description: Intron_maturas2 Location: 1293-1602 bp Feature: gene Location: 2283-3020 bp Feature: domain Description: Toprim_2 Location: 2634-2913 bp Feature: domain Description: Toprim_2 Location: 2634-2913 bp Feature: gene Location: 3049-3507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)