myRT

myRT report for GCA_003470825.1_ASM347082v1

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Seq: QRHN01000016.1 Dorea formicigenerans strain AM23-7AC AM23-7AC.Scaf16, whole genome shotgun sequence (87406 bp)
Overview 1 RT 1: 27521-42090 bp Neighborhood of RT #1 [27521, 43265] YtxK COG4646 PRK01172 RVT-GII Intron_maturas2 HNHc KOG1000 Peptidase_M78 YodL DUF3849 LPD18 LPD16 LPD16 Feature: gene Location: 27521-34948 bp Feature: domain Description: YtxK Location: 31526-31916 bp Feature: domain Description: YtxK Location: 31 526-31 91 6 bp Feature: domain Description: COG4646 Location: 31982-34544 bp Feature: domain Description: COG4646 Location: 31 982-34544 bp Feature: domain Description: PRK01172 Location: 34682-34886 bp Feature: domain Description: PRK01 1 72 Location: 34682-34886 bp Feature: gene Location: 35071-35265 bp Feature: gene Location: 35498-37312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35762-36584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35762-36584 bp Feature: domain Description: Intron_maturas2 Location: 36656-37088 bp Feature: domain Description: Intron_maturas2 Location: 36656-37088 bp Feature: domain Description: HNHc Note: nucleases Location: 37139-37283 bp Feature: domain Description: HNHc Note: nucleases Location: 371 39-37283 bp Feature: gene Location: 37372-38469 bp Feature: domain Description: KOG1000 Location: 37420-37669 bp Feature: domain Description: KOG1 000 Location: 37420-37669 bp Feature: gene Location: 38514-43265 bp Feature: domain Description: Peptidase_M78 Location: 39069-39252 bp Feature: domain Description: Peptidase_M78 Location: 39069-39252 bp Feature: domain Description: YodL Location: 40014-40308 bp Feature: domain Description: YodL Location: 4001 4-40308 bp Feature: domain Description: DUF3849 Location: 40365-40740 bp Feature: domain Description: DUF3849 Location: 40365-40740 bp Feature: domain Description: LPD18 Location: 40779-41022 bp Feature: domain Description: LPD1 8 Location: 40779-41 022 bp Feature: domain Description: LPD16 Location: 41532-41745 bp Feature: domain Description: LPD1 6 Location: 41 532-41 745 bp Feature: domain Description: LPD16 Location: 41889-42090 bp Feature: domain Description: LPD1 6 Location: 41 889-42090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), PRK01172 (ATP-dependent DNA helicase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Peptidase_M78 (pfam06114), YodL (pfam14191), DUF3849 (pfam12960)
LPD18 (pfam18832), LPD16 (pfam18830)

Seq: QRHN01000002.1 Dorea formicigenerans strain AM23-7AC AM23-7AC.Scaf2, whole genome shotgun sequence (352795 bp)
Overview 1 RT 1: 129369-135287 bp Neighborhood of RT #1 [129369, 135451] RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type PrgI Feature: gene Location: 129369-130169 bp Feature: gene Location: 130241-130468 bp Feature: gene Location: 130615-132408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130882-131701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130882 -131701 bp Feature: domain Description: Intron_maturas2 Location: 131791-132085 bp Feature: domain Description: Intron_maturas2 Location: 131791-132 085 bp Feature: gene Location: 132904-135012 bp Feature: domain Description: VirB4_CagE Location: 132964-133372 bp Feature: domain Description: VirB4_CagE Location: 132 964-133372 bp Feature: domain Description: TraC-F-type Location: 133762-134977 bp Feature: domain Description: TraC-F-type Location: 133762 -134977 bp Feature: gene Location: 135005-135451 bp Feature: domain Description: PrgI Location: 135017-135287 bp Feature: domain Description: PrgI Location: 135017-1352 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666)

Seq: QRHN01000041.1 Dorea formicigenerans strain AM23-7AC AM23-7AC.Scaf41, whole genome shotgun sequence (1850 bp)
Overview 1 RT 1: 84-1648 bp Neighborhood of RT #1 [84, 1648] RVT-GII GIIM Feature: gene Location: 84-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 15-93 0 bp Feature: domain Description: GIIM Note: maturase Location: 993-1221 bp Feature: domain Description: GIIM Note: maturase Location: 993 -1221 bp Feature: gene Location: 1508-1648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRHN01000043.1 Dorea formicigenerans strain AM23-7AC AM23-7AC.Scaf43, whole genome shotgun sequence (1771 bp)
Overview 1 RT 1: 262-1489 bp Neighborhood of RT #1 [262, 1728] RVT-GII RVT-GII GIIM GIIM Feature: gene Location: 262-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 90-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 -1153 bp Feature: domain Description: GIIM Note: maturase Location: 1225-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1225-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1402-1489 bp Feature: domain Description: GIIM Note: maturase Location: 14 02-14 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRHN01000006.1 Dorea formicigenerans strain AM23-7AC AM23-7AC.Scaf6, whole genome shotgun sequence (131943 bp)
Overview 1 RT 1: 42406-45306 bp Neighborhood of RT #1 [42406, 45306] RVT_N RVT-GII Feature: gene Location: 42406-42540 bp Feature: gene Location: 42737-42901 bp Feature: gene Location: 43059-44474 bp Feature: RT Description: RVT_N Location: 43104-43344 bp Feature: RT Description: RVT_N Location: 43104-43344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43392-44151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43392-4415 1 bp Feature: gene Location: 44446-44841 bp Feature: gene Location: 45004-45306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII