myRT

myRT report for GCA_003470885.1_ASM347088v1

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Seq: QRHP01000001.1 Roseburia inulinivorans strain AM23-23AC AM23-23AC.Scaf1, whole genome shotgun sequence (596510 bp)
Overview 1 RT 1: 489030-502754 bp Neighborhood of RT #1 [489030, 502786] CtkA Mrr_cat dnaG RVT-UG10 COG5610 EPS_sugtrans Feature: gene Location: 489030-490208 bp Feature: domain Description: CtkA Location: 489558-490038 bp Feature: domain Description: CtkA Location: 489558-490038 bp Feature: gene Location: 490555-491973 bp Feature: domain Description: Mrr_cat Location: 491569-491863 bp Feature: domain Description: Mrr_cat Location: 491 569-491 863 bp Feature: gene Location: 492014-499342 bp Feature: domain Description: dnaG Location: 492059-493145 bp Feature: domain Description: dnaG Location: 492059-4931 45 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 493853-494498 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 493853-494498 bp Feature: gene Location: 499533-501557 bp Feature: domain Description: COG5610 Location: 499821-500814 bp Feature: domain Description: COG561 0 Location: 499821 -50081 4 bp Feature: gene Location: 501554-502786 bp Feature: domain Description: EPS_sugtrans Location: 501935-502754 bp Feature: domain Description: EPS_sugtrans Location: 501 935-502754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CtkA (cd17792), Mrr_cat (pfam04471), dnaG (TIGR01391), RVT-UG10, COG5610 (Predicted hydrolase, HAD superfamily ), EPS_sugtrans (TIGR03025)

Seq: QRHP01000010.1 Roseburia inulinivorans strain AM23-23AC AM23-23AC.Scaf10, whole genome shotgun sequence (128808 bp)
Overview 1 RT 1: 32749-36632 bp Neighborhood of RT #1 [32749, 37618] PRK00865 RVT-GII GIIM AAA_21 Feature: gene Location: 32749-33534 bp Feature: domain Description: PRK00865 Location: 32758-33520 bp Feature: domain Description: PRK00865 Location: 32 758-3352 0 bp Feature: gene Location: 33775-34041 bp Feature: gene Location: 34586-35980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34904-35528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34904-3552 8 bp Feature: domain Description: GIIM Note: maturase Location: 35585-35795 bp Feature: domain Description: GIIM Note: maturase Location: 35585-35795 bp Feature: gene Location: 36029-36163 bp Feature: gene Location: 36281-37618 bp Feature: domain Description: AAA_21 Location: 36416-36632 bp Feature: domain Description: AAA_2 1 Location: 36416-36632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00865 (glutamate racemase; Provisional), RVT-GII, GIIM (pfam08388), AAA_21 (pfam13304)

Seq: QRHP01000017.1 Roseburia inulinivorans strain AM23-23AC AM23-23AC.Scaf17, whole genome shotgun sequence (65677 bp)
Overview 1 RT 1: 12362-16500 bp Neighborhood of RT #1 [12362, 16500] LPD26 SpoVG RVT-GII Intron_maturas2 HNHc Feature: gene Location: 12362-13003 bp Feature: domain Description: LPD26 Location: 12392-12557 bp Feature: domain Description: LPD26 Location: 123 92-12557 bp Feature: domain Description: SpoVG Location: 12632-12860 bp Feature: domain Description: SpoVG Location: 1263 2-12860 bp Feature: gene Location: 13046-13261 bp Feature: gene Location: 13424-15256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13688-14519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 688-14519 bp Feature: domain Description: Intron_maturas2 Location: 14591-14906 bp Feature: domain Description: Intron_maturas2 Location: 14591-14906 bp Feature: domain Description: HNHc Note: nucleases Location: 15053-15227 bp Feature: domain Description: HNHc Note: nucleases Location: 15053 -15227 bp Feature: gene Location: 15499-15717 bp Feature: gene Location: 15832-16500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD26 (pfam18842), SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRHP01000004.1 Roseburia inulinivorans strain AM23-23AC AM23-23AC.Scaf4, whole genome shotgun sequence (196478 bp)
Overview 1 RT 1: 7253-10553 bp Neighborhood of RT #1 [7253, 10984] SH3_and_anchor SH3_and_anchor RVT-GII GIIM Mob_Pre Feature: gene Location: 7253-7471 bp Feature: gene Location: 7493-8188 bp Feature: domain Description: SH3_and_anchor Location: 7517-7799 bp Feature: domain Description: SH3_and_anchor Location: 7517-7799 bp Feature: domain Description: SH3_and_anchor Location: 7898-8087 bp Feature: domain Description: SH3_and_anchor Location: 7898-8087 bp Feature: gene Location: 8329-9627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8584-9277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8584 -9277 bp Feature: domain Description: GIIM Note: maturase Location: 9340-9556 bp Feature: domain Description: GIIM Note: maturase Location: 934 0-9556 bp Feature: gene Location: 9678-9851 bp Feature: gene Location: 10094-10984 bp Feature: domain Description: Mob_Pre Location: 10157-10553 bp Feature: domain Description: Mob_Pre Location: 10157-10553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_and_anchor (TIGR04211), RVT-GII, GIIM (pfam08388), Mob_Pre (pfam01076)

Seq: QRHP01000009.1 Roseburia inulinivorans strain AM23-23AC AM23-23AC.Scaf9, whole genome shotgun sequence (135053 bp)
Overview 1 RT 1: 236-3562 bp Neighborhood of RT #1 [236, 3562] RVT-GII GIIM XerC Feature: gene Location: 236-430 bp Feature: gene Location: 522-1811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1527-1740 bp Feature: domain Description: GIIM Note: maturase Location: 15 27-1740 bp Feature: gene Location: 2069-3400 bp Feature: domain Description: XerC Location: 2450-3362 bp Feature: domain Description: XerC Location: 245 0-3362 bp Feature: gene Location: 3404-3562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), XerC (COG4973)