myRT

myRT report for GCA_003470905.1_ASM347090v1

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Seq: QRHS01000002.1 Roseburia sp. AM23-20 AM23-20.Scaf2, whole genome shotgun sequence (270421 bp)
Overview 1 RT 1: 56171-62089 bp Neighborhood of RT #1 [56171, 62253] RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type PrgI Feature: gene Location: 56171-56971 bp Feature: gene Location: 57043-57270 bp Feature: gene Location: 57417-59210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57684-58503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57684-58503 bp Feature: domain Description: Intron_maturas2 Location: 58593-58887 bp Feature: domain Description: Intron_maturas2 Location: 58593-58887 bp Feature: gene Location: 59706-61814 bp Feature: domain Description: VirB4_CagE Location: 59766-60174 bp Feature: domain Description: VirB4_CagE Location: 59766-601 74 bp Feature: domain Description: TraC-F-type Location: 60564-61779 bp Feature: domain Description: TraC-F-type Location: 60564-61 779 bp Feature: gene Location: 61807-62253 bp Feature: domain Description: PrgI Location: 61819-62089 bp Feature: domain Description: PrgI Location: 61 81 9-62089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666)

Seq: QRHS01000006.1 Roseburia sp. AM23-20 AM23-20.Scaf6, whole genome shotgun sequence (163152 bp)
Overview 1 RT 1: 22398-26704 bp 2 RT 2: 80253-84488 bp Neighborhood of RT #1 [22398, 26790] RVT-DGRs DUF3751 Neighborhood of RT #2 [80253, 84488] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR DUF3837 Feature: gene Location: 22398-22751 bp Feature: gene Location: 23115-23378 bp Feature: gene Location: 23317-24540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23611-24232 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3611-2 42 32 bp Feature: gene Location: 24962-26239 bp Feature: gene Location: 26239-26790 bp Feature: domain Description: DUF3751 Location: 26263-26704 bp Feature: domain Description: DUF3751 Location: 2 62 63-2 6704 bp Feature: gene Location: 80253-80585 bp Feature: domain Description: Cas2_I_II_III Location: 80334-80556 bp Feature: domain Description: Cas2 _I_II_III Location: 80334-80556 bp Feature: gene Location: 80872-81702 bp Feature: domain Description: Cas1_I-II-III Location: 80887-81664 bp Feature: domain Description: Cas1_I-II-III Location: 80887-81664 bp Feature: gene Location: 81981-82778 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 82191-82764 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 82 191-82 764 bp Feature: gene Location: 83850-84185 bp Feature: domain Description: DUF3837 Location: 83853-84150 bp Feature: domain Description: DUF3837 Location: 83853-84150 bp Feature: gene Location: 84189-84488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, DUF3837 (pfam12939)

Seq: QRHS01000065.1 Roseburia sp. AM23-20 AM23-20.Scaf65, whole genome shotgun sequence (1505 bp)
Overview 1 RT 1: 2-1491 bp Neighborhood of RT #1 [2, 1502] RVT-GII RVT-GII Feature: gene Location: 2-259 bp Feature: gene Location: 340-477 bp Feature: gene Location: 464-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674-743 bp Feature: gene Location: 792-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII