myRT

myRT report for GCA_003471045.1_ASM347104v1

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Seq: QRID01000001.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf1, whole genome shotgun sequence (366699 bp)
Overview 1 RT 1: 148935-154322 bp Neighborhood of RT #1 [148935, 155173] HK_WalK KdpD OmpR RVT-GII ParM_like MobA_MobL Feature: gene Location: 148935-150095 bp Feature: domain Description: HK_WalK Location: 149202-149406 bp Feature: domain Description: HK_WalK Location: 1 49202-1 49406 bp Feature: domain Description: KdpD Location: 149439-150075 bp Feature: domain Description: KdpD Location: 1 49439-1 50075 bp Feature: gene Location: 150101-150775 bp Feature: domain Description: OmpR Location: 150113-150770 bp Feature: domain Description: OmpR Location: 1 501 1 3-1 50770 bp Feature: gene Location: 150921-152327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151311-151974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 31 1 -1 51 974 bp Feature: gene Location: 152953-153747 bp Feature: domain Description: ParM_like Location: 153022-153640 bp Feature: domain Description: ParM_like Location: 1 53022-1 53640 bp Feature: gene Location: 153809-155173 bp Feature: domain Description: MobA_MobL Location: 153815-154322 bp Feature: domain Description: MobA_MobL Location: 1 5381 5-1 54322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HK_WalK (NF033092), KdpD (pfam02702), OmpR (COG0745), RVT-GII, ParM_like (cd10227), MobA_MobL (pfam03389)

Seq: QRID01000002.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf2, whole genome shotgun sequence (349483 bp)
Overview 1 RT 1: 99707-103321 bp Neighborhood of RT #1 [99707, 103323] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 99707-100195 bp Feature: domain Description: Phage_holin_4_1 Location: 99746-100106 bp Feature: domain Description: Phage_holin_4_1 Location: 99746-100106 bp Feature: gene Location: 100192-100371 bp Feature: gene Location: 100396-101457 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 100633-101254 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 100633-1012 54 bp Feature: gene Location: 101784-102140 bp Feature: domain Description: Avd_like Location: 101814-102120 bp Feature: domain Description: Avd_like Location: 101814-102 12 0 bp Feature: gene Location: 102181-103323 bp Feature: domain Description: PHA00653 Location: 102304-103321 bp Feature: domain Description: PHA00653 Location: 102 304-10332 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105)

Seq: QRID01000045.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf45, whole genome shotgun sequence (4750 bp)
Overview 1 RT 1: 1593-4718 bp Neighborhood of RT #1 [1593, 4747] TnpV RVT-GII GIIM DNA_ligase_A_N Feature: gene Location: 1593-1970 bp Feature: domain Description: TnpV Location: 1638-1962 bp Feature: domain Description: TnpV Location: 163 8-1962 bp Feature: gene Location: 2262-2435 bp Feature: gene Location: 2486-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2741-3434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2741-3 43 4 bp Feature: domain Description: GIIM Note: maturase Location: 3494-3713 bp Feature: domain Description: GIIM Note: maturase Location: 3 494-3 713 bp Feature: gene Location: 3895-4236 bp Feature: gene Location: 4364-4747 bp Feature: domain Description: DNA_ligase_A_N Location: 4472-4718 bp Feature: domain Description: DNA_ligase_A_N Location: 4472-4718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-GII, GIIM (pfam08388), DNA_ligase_A_N (pfam04675)

Seq: QRID01000053.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf53, whole genome shotgun sequence (1912 bp)
Overview 1 RT 1: 87-1910 bp Neighborhood of RT #1 [87, 1910] RVT-GII GIIM Feature: gene Location: 87-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-912 bp Feature: domain Description: GIIM Note: maturase Location: 972-1188 bp Feature: domain Description: GIIM Note: maturase Location: 972-1188 bp Feature: gene Location: 1698-1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRID01000007.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf7, whole genome shotgun sequence (182273 bp)
Overview 1 RT 1: 37-6251 bp 2 RT 2: 135706-141285 bp Neighborhood of RT #1 [37, 6251] RVT-GII GIIM Peptidase_M64 Peptidase_M64 fn3 Neighborhood of RT #2 [135706, 141341] fliD fliD RVT-GII GIIM FliS FlgN Feature: gene Location: 37-462 bp Feature: gene Location: 537-680 bp Feature: gene Location: 667-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-1492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-1492 bp Feature: domain Description: GIIM Note: maturase Location: 1558-1777 bp Feature: domain Description: GIIM Note: maturase Location: 15 5 8-1777 bp Feature: gene Location: 2179-5823 bp Feature: domain Description: Peptidase_M64 Location: 3235-3421 bp Feature: domain Description: Peptidase_M64 Location: 3235 -3421 bp Feature: domain Description: Peptidase_M64 Location: 3664-3916 bp Feature: domain Description: Peptidase_M64 Location: 3664-3916 bp Feature: domain Description: fn3 Location: 5533-5755 bp Feature: domain Description: fn3 Location: 5 5 33-5 75 5 bp Feature: gene Location: 6096-6251 bp Feature: gene Location: 135706-138480 bp Feature: domain Description: fliD Location: 135742-136369 bp Feature: domain Description: fliD Location: 135 742-136369 bp Feature: domain Description: fliD Location: 137212-138478 bp Feature: domain Description: fliD Location: 137212-138478 bp Feature: gene Location: 138924-139061 bp Feature: gene Location: 139048-140331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139258-139873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13925 8-139873 bp Feature: domain Description: GIIM Note: maturase Location: 139933-140149 bp Feature: domain Description: GIIM Note: maturase Location: 139933-140149 bp Feature: gene Location: 140468-140848 bp Feature: domain Description: FliS Location: 140489-140825 bp Feature: domain Description: FliS Location: 140489-140825 bp Feature: gene Location: 140862-141341 bp Feature: domain Description: FlgN Location: 140892-141285 bp Feature: domain Description: FlgN Location: 140892-141285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M64 (pfam09471), fn3 (pfam00041), RVT-GII, GIIM (pfam08388), fliD (PRK08724), FliS (pfam02561), FlgN (pfam05130)